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Abhd1 Pseudogene Detail
Summary
  • Symbol
    Abhd1
  • Name
    abhydrolase domain containing 1
  • Synonyms
    alpha/beta hydrolase-1, LABH-1, LABH1
Location &
Maps
more
  • Sequence Map
    Chr5:31107410-31112435 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 16.90 cM, cytoband B1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    187 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931013
 polymorphic pseudogene Chr5:31107410-31112439 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015593
 unclassified non-coding RNA gene Chr5:28909322-28914352 (+)
A/J MGP_AJ_G0015569
 unclassified non-coding RNA gene Chr5:27972550-27977584 (+)
AKR/J MGP_AKRJ_G0015533
 unclassified non-coding RNA gene Chr5:29123926-29128956 (+)
BALB/cJ MGP_BALBcJ_G0015531
 unclassified non-coding RNA gene Chr5:28493035-28498065 (+)
C3H/HeJ MGP_C3HHeJ_G0015353
 unclassified non-coding RNA gene Chr5:29122394-29127428 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015985
 unclassified non-coding RNA gene Chr5:30689323-30694348 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013720
 unclassified non-coding RNA gene Chr5:25448975-25453986 (+)
CAST/EiJ MGP_CASTEiJ_G0014909
 unclassified non-coding RNA gene Chr5:28217033-28222061 (+)
CBA/J MGP_CBAJ_G0015334
 unclassified non-coding RNA gene Chr5:31260033-31265067 (+)
DBA/2J MGP_DBA2J_G0015428
 unclassified non-coding RNA gene Chr5:28153363-28158388 (+)
FVB/NJ MGP_FVBNJ_G0015435
 unclassified non-coding RNA gene Chr5:27567129-27572163 (+)
LP/J MGP_LPJ_G0015509
 unclassified non-coding RNA gene Chr5:29371887-29376917 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015458
 unclassified non-coding RNA gene Chr5:32154399-32159433 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016027
 unclassified non-coding RNA gene Chr5:28624596-28629621 (+)
PWK/PhJ MGP_PWKPhJ_G0014694
 unclassified non-coding RNA gene Chr5:27271163-27276788 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014482
 unclassified non-coding RNA gene Chr5:27997256-28002265 (+)
WSB/EiJ MGP_WSBEiJ_G0015013
 unclassified non-coding RNA gene Chr5:28688968-28693996 (+)



Homology
more
  • Human Ortholog
    ABHD1, abhydrolase domain containing 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ABHD1, abhydrolase domain containing 1
  • Synonyms
    LABH1
  • Links
    NCBI Gene ID: 84696
    neXtProt AC: NX_Q96SE0
    UniProt: Q96SE0

  • Chr Location
    2p23.3; chr2:27123789-27130812 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    23 phenotype references
  • All Mutations and Alleles
    6
  • Chemically induced (other)
    2
  • Gene trapped
    1
  • Radiation induced
    2
  • Spontaneous
    1
  • Genomic Mutations
    5 involving Abhd1
  • Find Mice (IMSR)
    1 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    19
  • cDNA Data
    8
  • Literature Summary
    2
Sequences &
Gene Models
less
  • All Sequences
    35
  • RefSeq
    3
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000006638 Ensembl Gene Model | MGI Sequence Detail 5026 C57BL/6J ±  kb
transcript ENSMUST00000201125 Ensembl | MGI Sequence Detail 1352 Not Applicable  
polypeptide ENSMUSP00000158679 Ensembl | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 10
    Genomic 1
    cDNA 8
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 45
    Developmental Gene Expression 2
    Diseases 1
    Gene Ontology 3
    Phenotypes 23
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory