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Clca3a2 Gene Detail
Summary
  • Symbol
    Clca3a2
  • Name
    chloride channel accessory 3A2
  • Synonyms
    Clca2
  • Feature Type
    protein coding gene
  • IDs
    MGI:1931471
    NCBI Gene: 80797
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:144502320-144525255 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 69.12 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    627 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931471
 protein coding gene Chr3:144486340-144525385 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027953
 protein coding gene Chr3:148124947-148191101 (-)
A/J MGP_AJ_G0027911
 protein coding gene Chr3:142832295-142931971 (-)
AKR/J MGP_AKRJ_G0027877
 protein coding gene Chr3:146609624-146642105 (-)
BALB/cJ MGP_BALBcJ_G0027922
 protein coding gene Chr3:142689783-142725387 (-)
C3H/HeJ MGP_C3HHeJ_G0027653
 protein coding gene Chr3:147034451-147101765 (-)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0025705
 protein coding gene Chr3:137947327-137994048 (-)
CAST/EiJ MGP_CASTEiJ_G0027108
 protein coding gene Chr3:146904692-146907738 (-)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0027735
 protein coding gene Chr3:139449536-139451101 (-)
LP/J MGP_LPJ_G0027878
 protein coding gene Chr3:149492027-149551241 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027768
 protein coding gene Chr3:166815193-166869814 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028424
 protein coding gene Chr3:146278030-146302874 (-)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0026659
 protein coding gene Chr3:144389001-144396241 (-)
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    CLCA3P, chloride channel accessory 3, pseudogene
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CLCA3P, chloride channel accessory 3, pseudogene
  • Synonyms
    CLCA3
  • Links
    NCBI Gene ID: 9629
    UniProt: Q9Y6N3

  • Chr Location
    1p22.3; chr1:86634273-86655376 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    901
  • Tissues
    60
  • cDNA Data
    8
  • Literature Summary
    8
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000028262 Ensembl Gene Model | MGI Sequence Detail 22936 C57BL/6J ±  kb
transcript ENSMUST00000029929 Ensembl | MGI Sequence Detail 3654 Not Applicable  
polypeptide ENSMUSP00000029929 Ensembl | MGI Sequence Detail 902 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    6 Sequences
  • InterPro Domains
    IPR013642 Calcium-activated chloride channel, N-terminal
    IPR004727 Calcium-activated chloride channel protein, chordata
    IPR051266 Calcium-activated chloride channel regulator
    IPR013783 Immunoglobulin-like fold
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
Molecular
Reagents
less
  • All nucleic 17
    cDNA 8
    Primer pair 7
    Other 2

    Microarray probesets 4
References
more
  • Summaries
    All 33
    Developmental Gene Expression 8
    Diseases 1
    Gene Ontology 2
    Phenotypes 6
  • Earliest
    J:5128 Stewart AD, et al., Studies on syndrome of diabetes insipidus associated with oligosyndactyly in mice. Am J Physiol. 1969 Oct;217(4):1191-8
  • Latest
    J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory