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Ghdc Gene Detail
Summary
  • Symbol
    Ghdc
  • Name
    GH3 domain containing
  • Synonyms
    D11Lgp1e
  • Feature Type
    protein coding gene
  • IDs
    MGI:1931556
    NCBI Gene: 80860
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:100656852-100661772 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 63.60 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    224 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1931556
 protein coding gene Chr11:100656852-100661783 (-)
129S1/SvImJ MGP_129S1SvImJ_G0019170
 protein coding gene Chr11:103539346-103544271 (-)
A/J MGP_AJ_G0019138
 protein coding gene Chr11:99218512-99223508 (-)
AKR/J MGP_AKRJ_G0019107
 protein coding gene Chr11:102299745-102308873 (-)
BALB/cJ MGP_BALBcJ_G0019112
 protein coding gene Chr11:99704726-99709699 (-)
C3H/HeJ MGP_C3HHeJ_G0018921
 protein coding gene Chr11:102463188-102468176 (-)
C57BL/6NJ MGP_C57BL6NJ_G0019561
 protein coding gene Chr11:106747402-106752327 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0017187
 protein coding gene Chr11:96636469-96641103 (-)
CAST/EiJ MGP_CASTEiJ_G0018475
 protein coding gene Chr11:103448787-103453683 (-)
CBA/J MGP_CBAJ_G0018890
 protein coding gene Chr11:111204832-111212939 (-)
DBA/2J MGP_DBA2J_G0019002
 protein coding gene Chr11:98754480-98759342 (-)
FVB/NJ MGP_FVBNJ_G0018992
 protein coding gene Chr11:98293786-98298731 (-)
LP/J MGP_LPJ_G0019071
 protein coding gene Chr11:104098020-104103599 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0019023
 protein coding gene Chr11:110787634-110792563 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0019599
 protein coding gene Chr11:102615000-102619925 (-)
PWK/PhJ MGP_PWKPhJ_G0018238
 protein coding gene Chr11:99793808-99799048 (-)
SPRET/EiJ MGP_SPRETEiJ_G0018030
 protein coding gene Chr11:102356957-102361829 (-)
WSB/EiJ MGP_WSBEiJ_G0018524
 protein coding gene Chr11:102605148-102610005 (-)



Homology
more
  • Human Ortholog
    GHDC, GH3 domain containing
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GHDC, GH3 domain containing
  • Synonyms
    D11LGP1, LGP1
  • Links
    NCBI Gene ID: 84514
    neXtProt AC: NX_Q8N2G8
    UniProt: Q8N2G8

  • Chr Location
    17q21.2; chr17:42188799-42194513 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    34
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 80860 NCBI Gene Model | MGI Sequence Detail 4921 C57BL/6J ±  kb
transcript NM_031871 RefSeq | MGI Sequence Detail 2457 ZRU/MplStud  
polypeptide Q99J23 UniProt | EBI | MGI Sequence Detail 532 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 34
    cDNA 34

    Microarray probesets 2
References
more
  • Summaries
    All 31
    Gene Ontology 3
    Phenotypes 13
  • Earliest
    J:50799 Liu P, et al., Embryonic lethality and tumorigenesis caused by segmental aneuploidy on mouse chromosome 11. Genetics. 1998 Nov;150(3):1155-68
  • Latest
    J:232020 Ermakova O, et al., Sensitized phenotypic screening identifies gene dosage sensitive region on chromosome 11 that predisposes to disease in mice. EMBO Mol Med. 2011 Jan;3(1):50-66
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory