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Kcnip4 Gene Detail
Summary
  • Symbol
    Kcnip4
  • Name
    Kv channel interacting protein 4
  • Synonyms
    Calp250, KChIP4a
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933131
    NCBI Gene: 80334
  • Alliance
    gene page
  • Transcription Start Sites
    36 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:48546844-49682249 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 26.26 cM, cytoband B3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    36668 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933131
 protein coding gene Chr5:48546844-49682464 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029540
 protein coding gene Chr5:47191825-48387836 (-)
A/J MGP_AJ_G0029508
 protein coding gene Chr5:45572589-46698333 (-)
AKR/J MGP_AKRJ_G0029456
 protein coding gene Chr5:47120430-48297213 (-)
BALB/cJ MGP_BALBcJ_G0029517
 protein coding gene Chr5:46063963-47203014 (-)
C3H/HeJ MGP_C3HHeJ_G0029240
 protein coding gene Chr5:47287561-48457210 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029971
 protein coding gene Chr5:49306888-50478270 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027210
 protein coding gene Chr5:42513151-43611374 (-)
CAST/EiJ MGP_CASTEiJ_G0028648
 protein coding gene Chr5:46255493-47435377 (-)
CBA/J MGP_CBAJ_G0029209
 protein coding gene Chr5:50720707-51988272 (-)
DBA/2J MGP_DBA2J_G0029355
 protein coding gene Chr5:45645353-46777982 (-)
FVB/NJ MGP_FVBNJ_G0029315
 protein coding gene Chr5:45021542-46149591 (-)
LP/J MGP_LPJ_G0029440
 protein coding gene Chr5:47657036-48833986 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029343
 protein coding gene Chr5:51753494-53051120 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030004
 protein coding gene Chr5:46662969-47831516 (-)
PWK/PhJ MGP_PWKPhJ_G0028372
 protein coding gene Chr5:44727697-45850392 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028206
 protein coding gene Chr5:46024566-47223712 (-)
WSB/EiJ MGP_WSBEiJ_G0028729
 protein coding gene Chr5:46721139-47886729 (-)



Homology
more
  • Human Ortholog
    KCNIP4, potassium voltage-gated channel interacting protein 4
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    KCNIP4, potassium voltage-gated channel interacting protein 4
  • Synonyms
    CALP, KCHIP4
  • Links
    NCBI Gene ID: 80333
    neXtProt AC: NX_Q6PIL6
    UniProt: Q6PIL6

  • Chr Location
    4p15.31-p15.2; chr4:20728606-21948772 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    24 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    32
  • GO References
    9
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    881
  • Tissues
    85
  • cDNA Data
    15
  • Literature Summary
    3
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000029088 Ensembl Gene Model | MGI Sequence Detail 1135406 C57BL/6J ±  kb
transcript ENSMUST00000087395 Ensembl | MGI Sequence Detail 2366 Not Applicable  
polypeptide ENSMUSP00000084656 Ensembl | MGI Sequence Detail 250 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 19
    cDNA 15
    Primer pair 4

    Microarray probesets 5
Other
Accession IDs
less
MGI:2141108
References
more
  • Summaries
    All 60
    Developmental Gene Expression 3
    Diseases 1
    Gene Ontology 9
    Phenotypes 24
  • Earliest
    J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory