Snord22 Gene Detail

Summary

• Symbol
  Snord22
• Name
  small nucleolar RNA, C/D box 22
• Synonyms
  Rnu22, U22

• Feature Type
  snoRNA gene
• IDs
  MGI:1933385
  NCBI Gene: 100127111
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:8703230-8703355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 5.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1933385	snoRNA gene	Chr19:8703230-8703355 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0038957	snoRNA gene	Chr19:5994299-5994424 (+)
A/J	MGP_AJ_G0038952	snoRNA gene	Chr19:5677562-5677687 (+)
AKR/J	MGP_AKRJ_G0038887	snoRNA gene	Chr19:5763629-5763754 (+)
BALB/cJ	MGP_BALBcJ_G0038935	snoRNA gene	Chr19:5780341-5780466 (+)
C3H/HeJ	MGP_C3HHeJ_G0038599	snoRNA gene	Chr19:5846915-5847040 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0039485	snoRNA gene	Chr19:6114592-6114717 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036210	snoRNA gene	Chr19:5918094-5918219 (+)
CAST/EiJ	MGP_CASTEiJ_G0037740	snoRNA gene	Chr19:5494723-5494848 (+)
CBA/J	MGP_CBAJ_G0038570	snoRNA gene	Chr19:6227182-6227307 (+)
DBA/2J	MGP_DBA2J_G0038759	snoRNA gene	Chr19:5507672-5507797 (+)
FVB/NJ	MGP_FVBNJ_G0038711	snoRNA gene	Chr19:5583383-5583508 (+)
LP/J	MGP_LPJ_G0038799	snoRNA gene	Chr19:5886026-5886151 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0038712	snoRNA gene	Chr19:6102611-6102736 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040234	snoRNA gene	ChrX:129040328-129040453 (+)
PWK/PhJ	MGP_PWKPhJ_G0037424	snoRNA gene	Chr19:5173205-5173330 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037179	snoRNA gene	Chr19:5406716-5406841 (+)
WSB/EiJ	MGP_WSBEiJ_G0037968	snoRNA gene	Chr19:5772989-5773114 (+)

Homology

• Gene Tree
  Snord22
  

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000065087 (Evidence)
• NCBI Gene
  100127111

Representative Sequences			Length	Strain/Species
genomic	100127111	NCBI Gene Model | MGI Sequence Detail	126	C57BL/6J
transcript	NR_004445	RefSeq | MGI Sequence Detail	126	Not Specified

Molecular
Reagents

• 
  

  Microarray probesets 1

References

• Summaries
  All 9

  Developmental Gene Expression 1

  Gene Ontology 1
• Earliest
  J:49278 Tycowski KT, et al., A mammalian gene with introns instead of exons generating stable RNA products [see comments]. Nature. 1996 Feb 1;379(6564):464-6
• Latest
  J:234504 Shum EY, et al., The Antagonistic Gene Paralogs Upf3a and Upf3b Govern Nonsense-Mediated RNA Decay. Cell. 2016 Apr 7;165(2):382-95

TSS for Snord22:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154804	Chr19:8703224-8703238 (+)	1 bp