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Slc12a9 Gene Detail
Summary
  • Symbol
    Slc12a9
  • Name
    solute carrier family 12 (potassium/chloride transporters), member 9
  • Synonyms
    CIP1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1933532
    NCBI Gene: 83704
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:137312820-137331859 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 76.35 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    506 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1933532
 protein coding gene Chr5:137312820-137338331 (-)
129S1/SvImJ MGP_129S1SvImJ_G0030224
 protein coding gene Chr5:142046115-142069810 (-)
A/J MGP_AJ_G0030192
 protein coding gene Chr5:135866432-135887074 (-)
AKR/J MGP_AKRJ_G0030125
 protein coding gene Chr5:140270349-140291338 (-)
BALB/cJ MGP_BALBcJ_G0030202
 protein coding gene Chr5:137236875-137257517 (-)
C3H/HeJ MGP_C3HHeJ_G0029918
 protein coding gene Chr5:140924348-140947205 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030654
 protein coding gene Chr5:147310337-147335157 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027872
 protein coding gene Chr5:130120334-130138425 (-)
CAST/EiJ MGP_CASTEiJ_G0029328
 protein coding gene Chr5:140324917-140346519 (-)
CBA/J MGP_CBAJ_G0029888
 protein coding gene Chr5:153148984-153176356 (-)
DBA/2J MGP_DBA2J_G0030039
 protein coding gene Chr5:135774839-135794246 (-)
FVB/NJ MGP_FVBNJ_G0029994
 protein coding gene Chr5:134964807-134985060 (-)
LP/J MGP_LPJ_G0030128
 protein coding gene Chr5:142510326-142535522 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0030026
 protein coding gene Chr5:155994803-156019101 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030695
 protein coding gene Chr5:140125580-140146843 (-)
PWK/PhJ MGP_PWKPhJ_G0029041
 protein coding gene Chr5:134853219-134872819 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028877
 protein coding gene Chr5:137682460-137710284 (-)
WSB/EiJ MGP_WSBEiJ_G0029401
 protein coding gene Chr5:140854707-140878419 (-)



Homology
more
  • Human Ortholog
    SLC12A9, solute carrier family 12 member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC12A9, solute carrier family 12 member 9
  • Synonyms
    CCC6, CIP1, hCCC6, WO3.3
  • Links
    NCBI Gene ID: 56996
    neXtProt AC: NX_Q9BXP2
    UniProt: Q9BXP2

  • Chr Location
    7q22.1; chr7:100826820-100867012 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    13
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    800
  • Tissues
    94
  • cDNA Data
    41
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000037344 Ensembl Gene Model | MGI Sequence Detail 19040 C57BL/6J ±  kb
transcript ENSMUST00000039991 Ensembl | MGI Sequence Detail 3330 Not Applicable  
polypeptide ENSMUSP00000038106 Ensembl | MGI Sequence Detail 914 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • Protein Ontology
    PR:000014932 solute carrier family 12 member 9
    (term hierarchy)
  • InterPro Domains
    IPR004841 Amino acid permease/ SLC12A domain
    IPR018491 SLC12A transporter, C-terminal
    IPR004842 SLC12A transporter family
  • GlyGen
    Q99MR3 3 sites, 7 N-linked glycans (2 sites), 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 41
    cDNA 41

    Microarray probesets 3
References
more
  • Summaries
    All 31
    Developmental Gene Expression 1
    Gene Ontology 6
    Phenotypes 8
  • Earliest
    J:67990 Wilson MD, et al., Comparative analysis of the gene-dense ACHE/TFR2 region on human chromosome 7q22 with the orthologous region on mouse chromosome 5. Nucleic Acids Res. 2001 Mar 15;29(6):1352-65
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory