Hspe1-ps5 Pseudogene Detail

Summary

• Symbol
  Hspe1-ps5
• Name
  heat shock protein 1 (chaperonin 10), pseudogene 5
• Synonyms
  10kDa, Cpn10-rs6

• Feature Type
  pseudogene
• IDs
  MGI:1935166
  NCBI Gene: 93752
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:72786242-72786538 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 43.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  13

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1935166	pseudogene	Chr2:72786165-72786706 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011696	pseudogene	Chr2:73188191-73188487 (+)
A/J	MGP_AJ_G0011692	pseudogene	Chr2:70318497-70318793 (+)
AKR/J	MGP_AKRJ_G0011658	pseudogene	Chr2:72251763-72252059 (+)
BALB/cJ	MGP_BALBcJ_G0011673	pseudogene	Chr2:70515199-70515495 (+)
C3H/HeJ	MGP_C3HHeJ_G0011559	pseudogene	Chr2:72441000-72441296 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0011967	pseudogene	Chr2:75375639-75375935 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0011532	pseudogene	Chr2:78135090-78135386 (+)
DBA/2J	MGP_DBA2J_G0011584	pseudogene	Chr2:69924322-69924618 (+)
FVB/NJ	MGP_FVBNJ_G0011589	pseudogene	Chr2:69341487-69341783 (+)
LP/J	MGP_LPJ_G0011652	pseudogene	Chr2:73070889-73071185 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011589	pseudogene	Chr2:80072597-80072893 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0011960	pseudogene	Chr2:72328377-72328673 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Hspe1-ps5
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  13 phenotype references
  

• All Mutations and Alleles
  6
• Chemically induced (other)
  1
• Targeted
  5
• Genomic Mutations
  6 involving Hspe1-ps5
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  18
• RefSeq
  1

• Ensembl
  ENSMUSG00000084213 (Evidence)
• NCBI Gene
  93752

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084213	Ensembl Gene Model | MGI Sequence Detail	297	C57BL/6J
transcript	ENSMUST00000118080	Ensembl | MGI Sequence Detail	297	Not Applicable

References

• Summaries
  All 19

  Phenotypes 13
• Earliest
  J:69088 Fletcher BH, et al., The murine chaperonin 10 gene family contains an intronless, putative gene for early pregnancy factor, Cpn10-rs1. Mamm Genome. 2001 Feb;12(2):133-40
• Latest
  J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729