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Hdhd5 Gene Detail
Summary
  • Symbol
    Hdhd5
  • Name
    haloacid dehalogenase like hydrolase domain containing 5
  • Synonyms
    A930002G03Rik, Cecr5, MGC:25951
  • Feature Type
    protein coding gene
  • IDs
    MGI:2136976
    NCBI Gene: 214932
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:120486455-120508280 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 56.95 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    156 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2136976
 protein coding gene Chr6:120486453-120508319 (-)
129S1/SvImJ MGP_129S1SvImJ_G0031206
 protein coding gene Chr6:123405896-123429045 (-)
A/J MGP_AJ_G0031175
 protein coding gene Chr6:118660463-118683194 (-)
AKR/J MGP_AKRJ_G0031106
 protein coding gene Chr6:121865542-121893212 (-)
BALB/cJ MGP_BALBcJ_G0031186
 protein coding gene Chr6:118424732-118446690 (-)
C3H/HeJ MGP_C3HHeJ_G0030523
 protein coding gene Chr6:62426673-62448763 (+)
C57BL/6NJ MGP_C57BL6NJ_G0031644
 protein coding gene Chr6:126552037-126583392 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0028804
 protein coding gene Chr6:115562944-115584044 (-)
CAST/EiJ MGP_CASTEiJ_G0030293
 protein coding gene Chr6:122304280-122329273 (-)
CBA/J MGP_CBAJ_G0030869
 protein coding gene Chr6:131592456-131618085 (-)
DBA/2J MGP_DBA2J_G0031025
 protein coding gene Chr6:117545462-117569590 (-)
FVB/NJ MGP_FVBNJ_G0030977
 protein coding gene Chr6:116677022-116699538 (-)
LP/J MGP_LPJ_G0031104
 protein coding gene Chr6:123393522-123417343 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0031011
 protein coding gene Chr6:135575537-135601500 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0031673
 protein coding gene Chr6:121883669-121908064 (-)
PWK/PhJ MGP_PWKPhJ_G0030008
 protein coding gene Chr6:116586524-116609021 (-)
SPRET/EiJ MGP_SPRETEiJ_G0029837
 protein coding gene Chr6:120617922-120642524 (-)
WSB/EiJ MGP_WSBEiJ_G0030376
 protein coding gene Chr6:122178304-122201264 (-)



Homology
more
  • Human Ortholog
    HDHD5, haloacid dehalogenase like hydrolase domain containing 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    HDHD5, haloacid dehalogenase like hydrolase domain containing 5
  • Synonyms
    CECR5
  • Links
    NCBI Gene ID: 27440
    neXtProt AC: NX_Q9BXW7
    UniProt: Q9BXW7

  • Chr Location
    22q11.1; chr22:17137511-17165287 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    13
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058979 Ensembl Gene Model | MGI Sequence Detail 21826 C57BL/6J ±  kb
transcript ENSMUST00000075303 Ensembl | MGI Sequence Detail 1928 Not Applicable  
polypeptide ENSMUSP00000074775 Ensembl | MGI Sequence Detail 419 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 4
Other
Accession IDs
less
MGI:2442556
References
more
  • Summaries
    All 27
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 3
  • Earliest
    J:69974 Footz TK, et al., Analysis of the Cat Eye Syndrome Critical Region in Humans and the Region of Conserved Synteny in Mice: A Search for Candidate Genes at or near the Human Chromosome 22 Pericentromere. Genome Res. 2001 Jun;11(6):1053-70
  • Latest
    J:356218 Szakats S, et al., Sex-biased gene and microRNA expression in the developing mouse brain is associated with neurodevelopmental functions and neurological phenotypes. Biol Sex Differ. 2023 Sep 7;14(1):57
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory