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AA986860 Gene Detail
Summary
  • Symbol
    AA986860
  • Name
    expressed sequence AA986860
  • Feature Type
    protein coding gene
  • IDs
    MGI:2138143
    NCBI Gene: 212439
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:130659713-130672359 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 56.89 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    440 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2138143
 protein coding gene Chr1:130659707-130672359 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016440
 protein coding gene Chr1:134127830-134143240 (+)
A/J MGP_AJ_G0016423
 protein coding gene Chr1:129166452-129179116 (+)
AKR/J MGP_AKRJ_G0016388
 protein coding gene Chr1:132972054-132984678 (+)
BALB/cJ MGP_BALBcJ_G0016383
 protein coding gene Chr1:129498279-129513976 (+)
C3H/HeJ MGP_C3HHeJ_G0016209
 protein coding gene Chr1:133107547-133121412 (+)
C57BL/6NJ MGP_C57BL6NJ_G0016844
 protein coding gene Chr1:139113179-139127624 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014558
 protein coding gene Chr1:122312762-122325341 (+)
CAST/EiJ MGP_CASTEiJ_G0015789
 protein coding gene Chr1:132100788-132114484 (+)
CBA/J MGP_CBAJ_G0016181
 protein coding gene Chr1:143912204-143927602 (+)
DBA/2J MGP_DBA2J_G0016288
 protein coding gene Chr1:128130196-128143118 (+)
FVB/NJ MGP_FVBNJ_G0016287
 protein coding gene Chr1:126773654-126786287 (+)
LP/J MGP_LPJ_G0016359
 protein coding gene Chr1:135443670-135456267 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016312
 protein coding gene Chr1:149681246-149695118 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0016880
 protein coding gene Chr1:132735652-132748502 (+)
PWK/PhJ MGP_PWKPhJ_G0015575
 protein coding gene Chr1:127104821-127117678 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015362
 protein coding gene Chr1:131661120-131676014 (+)
WSB/EiJ MGP_WSBEiJ_G0015851
 protein coding gene Chr1:132697602-132711559 (+)



Homology
more
  • Human Ortholog
    C1orf116, chromosome 1 open reading frame 116
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C1orf116, chromosome 1 open reading frame 116
  • Synonyms
    SARG
  • Links
    NCBI Gene ID: 79098
    neXtProt AC: NX_Q9BW04
    UniProt: Q9BW04

  • Chr Location
    1q32.1; chr1:207018522-207032756 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    750
  • Tissues
    14
  • cDNA Data
    29
  • Literature Summary
    2
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000042510 Ensembl Gene Model | MGI Sequence Detail 12647 C57BL/6J ±  kb
    transcript ENSMUST00000039323 Ensembl | MGI Sequence Detail 2909 Not Applicable  
    polypeptide ENSMUSP00000046172 Ensembl | MGI Sequence Detail 606 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 29
      cDNA 29

      Microarray probesets 4
    References
    more
    • Summaries
      All 31
      Developmental Gene Expression 2
      Gene Ontology 3
      Phenotypes 9
    • Earliest
      J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory