Pax1dt Gene Detail

Summary

• Symbol
  Pax1dt
• Name
  paired box 1 divergent transcript
• Synonyms
  AI646519, OTTMUSG00000015701, Peat

• Feature Type
  lncRNA gene
• IDs
  MGI:2139024
  NCBI Gene: 99041
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr2:147203461-147204713 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 72.63 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  144 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139024	lncRNA gene	Chr2:147199374-147204713 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003661	antisense lncRNA gene	Chr2:151642069-151642937 (-)
A/J	MGP_AJ_G0003643	antisense lncRNA gene	Chr2:145479716-145480597 (-)
AKR/J	MGP_AKRJ_G0003621	antisense lncRNA gene	Chr2:149731605-149732473 (-)
BALB/cJ	MGP_BALBcJ_G0003632	antisense lncRNA gene	Chr2:145911345-145912226 (-)
C3H/HeJ	MGP_C3HHeJ_G0003579	antisense lncRNA gene	Chr2:150175855-150176736 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003771	antisense lncRNA gene	Chr2:156072779-156073647 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003278	antisense lncRNA gene	Chr2:139523373-139524267 (-)
CAST/EiJ	MGP_CASTEiJ_G0003542	antisense lncRNA gene	Chr2:150551201-150552070 (-)
CBA/J	MGP_CBAJ_G0003576	antisense lncRNA gene	Chr2:161773466-161774347 (-)
DBA/2J	MGP_DBA2J_G0003583	antisense lncRNA gene	Chr2:144741127-144741995 (-)
FVB/NJ	MGP_FVBNJ_G0003604	antisense lncRNA gene	Chr2:143277017-143277898 (-)
LP/J	MGP_LPJ_G0003661	antisense lncRNA gene	Chr2:151773345-151774213 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003592	antisense lncRNA gene	Chr2:165895495-165896376 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003771	antisense lncRNA gene	Chr2:149678002-149678883 (-)
PWK/PhJ	MGP_PWKPhJ_G0003497	antisense lncRNA gene	Chr2:144437160-144438028 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003440	antisense lncRNA gene	Chr2:148661541-148662418 (-)
WSB/EiJ	MGP_WSBEiJ_G0003576	antisense lncRNA gene	Chr2:150625079-150625960 (-)

Homology

• Gene Tree
  Pax1dt
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Endonuclease-mediated
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pax1dt
• Find Mice (IMSR)
  0 strains or lines available

Mice homozygous for a knock-out allele are viable and fertile and exhibit no overt phenotype.

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000087521 (Evidence)
• NCBI Gene
  99041

Representative Sequences			Length	Strain/Species
genomic	99041	NCBI Gene Model | MGI Sequence Detail	1253	C57BL/6J
transcript	NR_040330	RefSeq | MGI Sequence Detail	753	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGI:3651327, MGI:7567945

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Gene Ontology 1

  Phenotypes 4
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:239387 Stafford DA, et al., Deletion of the sclerotome-enriched lncRNA PEAT augments ribosomal protein expression. Proc Natl Acad Sci U S A. 2017 Jan 03;114(1):101-106

TSS for Pax1dt:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr26632	Chr2:147204355-147204368 (-)	351 bp