AU015228 Pseudogene Detail

Summary

• Symbol
  AU015228
• Name
  expressed sequence AU015228

• Feature Type
  pseudogene
  BioType Conflict
  
• IDs
  MGI:2139152
  NCBI Gene: 99169
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr2:129942444-129943763 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 2, 63.19 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  107 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139152	pseudogene	Chr2:129942314-129945295 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011860	pseudogene	Chr2:133520614-133521933 (+)
A/J	MGP_AJ_G0011850	pseudogene	Chr2:128136191-128137510 (+)
AKR/J	MGP_AKRJ_G0011818	pseudogene	Chr2:131799368-131800687 (+)
BALB/cJ	MGP_BALBcJ_G0011829	pseudogene	Chr2:128485416-128486735 (+)
C3H/HeJ	MGP_C3HHeJ_G0011711	pseudogene	Chr2:132260261-132261580 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012133	pseudogene	Chr2:137674939-137676258 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010617	pseudogene	Chr2:122881079-122882398 (+)
CAST/EiJ	MGP_CASTEiJ_G0011501	pseudogene	Chr2:132502741-132504039 (+)
CBA/J	MGP_CBAJ_G0011686	pseudogene	Chr2:142768405-142769724 (+)
DBA/2J	MGP_DBA2J_G0011742	pseudogene	Chr2:127525052-127526371 (+)
FVB/NJ	MGP_FVBNJ_G0011745	pseudogene	Chr2:126145054-126146373 (+)
LP/J	MGP_LPJ_G0011809	pseudogene	Chr2:133779504-133780823 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011750	pseudogene	Chr2:146633757-146635076 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012127	pseudogene	Chr2:131779268-131780587 (+)
PWK/PhJ	MGP_PWKPhJ_G0011348	pseudogene	Chr2:127074957-127076721 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0011166	pseudogene	Chr2:130905469-130906788 (+)
WSB/EiJ	MGP_WSBEiJ_G0011522	pseudogene	Chr2:132706600-132707919 (+)

Homology

• Gene Tree
  AU015228
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving AU015228
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  2
• UniProt
  2

• Ensembl
  ENSMUSG00000074804 (Evidence)
• NCBI Gene
  99169

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000074804	Ensembl Gene Model | MGI Sequence Detail	1320	C57BL/6J
transcript	ENSMUST00000121103	Ensembl | MGI Sequence Detail	1320	Not Applicable
polypeptide	NP_001028369	RefSeq | MGI Sequence Detail	439	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR024550 TFIIEalpha/SarR/Rpc3 HTH domain
  IPR039997 Transcription factor E
  IPR017919 Transcription factor TFE/TFIIEalpha HTH domain
  IPR021600 Transcription factor TFIIE alpha subunit, C-terminal
  IPR002853 Transcription initiation factor IIE subunit alpha, N-terminal
  IPR013083 Zinc finger, RING/FYVE/PHD-type

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 5

References

• Summaries
  All 15

  Phenotypes 3
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563