Rapgef4os2 MGI Mouse Gene Detail - MGI:2139429 - Rap guanine nucleotide exchange factor (GEF) 4, opposite strand 2

Sequence Map

Chr2:72055032-72062646 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139429	antisense lncRNA gene	Chr2:72055032-72062646 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0003583	antisense lncRNA gene	Chr2:72405064-72412683 (-)
A/J	MGP_AJ_G0003565	antisense lncRNA gene	Chr2:69565100-69573349 (-)
AKR/J	MGP_AKRJ_G0003543	antisense lncRNA gene	Chr2:71494727-71502333 (-)
BALB/cJ	MGP_BALBcJ_G0003554	antisense lncRNA gene	Chr2:69762964-69770570 (-)
C3H/HeJ	MGP_C3HHeJ_G0003501	antisense lncRNA gene	Chr2:71685002-71692621 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0003692	antisense lncRNA gene	Chr2:74583039-74590655 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003201	antisense lncRNA gene	Chr2:66799798-66807395 (-)
CAST/EiJ	MGP_CASTEiJ_G0003464	antisense lncRNA gene	Chr2:71894487-71902223 (-)
CBA/J	MGP_CBAJ_G0003498	antisense lncRNA gene	Chr2:77321427-77329046 (-)
DBA/2J	MGP_DBA2J_G0003506	antisense lncRNA gene	Chr2:69194059-69201756 (-)
FVB/NJ	MGP_FVBNJ_G0003526	antisense lncRNA gene	Chr2:68603229-68610835 (-)
LP/J	MGP_LPJ_G0003579	antisense lncRNA gene	Chr2:72289475-72297091 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0003514	antisense lncRNA gene	Chr2:79281582-79289183 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0003694	antisense lncRNA gene	Chr2:71572871-71580490 (-)
PWK/PhJ	MGP_PWKPhJ_G0003419	antisense lncRNA gene	Chr2:69080278-69087896 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0003363	antisense lncRNA gene	Chr2:71774807-71782484 (-)
WSB/EiJ	MGP_WSBEiJ_G0003499	antisense lncRNA gene	Chr2:72022773-72030380 (-)

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Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

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Representative Sequences				Length	Strain/Species	Flank
	genomic	ENSMUSG00000085001	Ensembl Gene Model \| MGI Sequence Detail	7615	C57BL/6J	± kb
	transcript	ENSMUST00000128165	Ensembl \| MGI Sequence Detail	2116	Not Applicable

Summaries

All 18

Phenotypes 13
Earliest

J:100298 Spitz F, et al., Inversion-induced disruption of the Hoxd cluster leads to the partition of regulatory landscapes. Nat Genet. 2005 Aug;37(8):889-93
Latest

J:239094 Schep R, et al., Control of Hoxd gene transcription in the mammary bud by hijacking a preexisting regulatory landscape. Proc Natl Acad Sci U S A. 2016 Nov 29;113(48):E7720-E7729

TSS for Rapgef4os2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr24505	Chr2:72062639-72062651 (-)	1 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24