Ankrd13c MGI Mouse Gene Detail - MGI:2139746

Symbol

Ankrd13c
Name

ankyrin repeat domain 13c

Feature Type

protein coding gene
IDs

MGI:2139746
NCBI Gene: 433667
Alliance

gene page
Transcription Start Sites

11 TSS

Sequence Map

Chr3:157652876-157713671 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 81.59 cM
Mapping Data

1 experiment

SNPs within 2kb

895 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2139746	protein coding gene	Chr3:157650886-157713671 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0028014	protein coding gene	Chr3:162102709-162164424 (+)
A/J	MGP_AJ_G0027972	protein coding gene	Chr3:156196105-156255966 (+)
AKR/J	MGP_AKRJ_G0027938	protein coding gene	Chr3:160342262-160404856 (+)
BALB/cJ	MGP_BALBcJ_G0027984	protein coding gene	Chr3:156000518-156069407 (+)
C3H/HeJ	MGP_C3HHeJ_G0027714	protein coding gene	Chr3:160744842-160805000 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028427	protein coding gene	Chr3:167418604-167482675 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025766	protein coding gene	Chr3:150806480-150866255 (+)
CAST/EiJ	MGP_CASTEiJ_G0027167	protein coding gene	Chr3:160890082-160947912 (+)
CBA/J	MGP_CBAJ_G0027689	protein coding gene	Chr3:173359379-173427155 (+)
DBA/2J	MGP_DBA2J_G0027829	protein coding gene	Chr3:155244199-155303761 (+)
FVB/NJ	MGP_FVBNJ_G0027796	protein coding gene	Chr3:152591770-152654238 (+)
LP/J	MGP_LPJ_G0027940	protein coding gene	Chr3:163437627-163493532 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027829	protein coding gene	Chr3:181948265-182014015 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028486	protein coding gene	Chr3:160023708-160084591 (+)
PWK/PhJ	MGP_PWKPhJ_G0026890	protein coding gene	Chr3:155169862-155231760 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026718	protein coding gene	Chr3:158244571-158298263 (+)
WSB/EiJ	MGP_WSBEiJ_G0027247	protein coding gene	Chr3:160984648-161048425 (+)

Human Ortholog

ANKRD13C, ankyrin repeat domain 13C

Vertebrate Orthologs

3

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ANKRD13C, ankyrin repeat domain 13C
Synonyms

dJ677H15.3
Links

HGNC:25374

NCBI Gene ID: 81573

neXtProt AC: NX_Q8N6S4

UniProt: Q8N6S4
Chr Location

1p31.1; chr1:70258999-70354734 (-) GRCh38

MGI Vertebrate Homology

Ankrd13c stringent orthology
1 human;1 mouse;1 rat;1 zebrafish
HCOP

vertebrate homology predictions: ANKRD13C
Gene Tree

Ankrd13c

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Phenotype Summary

5 phenotypes from 1 allele in 1 genetic background
11 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

20
Endonuclease-mediated

1
Gene trapped

18
Targeted

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

32 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

15
GO References

4

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

772
Tissues

9
cDNA Data

12
Literature Summary

1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase ankrd13c

ZFIN ankrd13c

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All Sequences

57
RefSeq

11
UniProt

2
CCDS

CCDS17933.1

Ensembl

ENSMUSG00000039988 (Evidence)
NCBI Gene

433667

			Length	Strain/Species	Flank
genomic	ENSMUSG00000039988	Ensembl Gene Model \| MGI Sequence Detail	60796	C57BL/6J	± kb
transcript	ENSMUST00000040787	Ensembl \| MGI Sequence Detail	3903	Not Applicable
polypeptide	ENSMUSP00000038662	Ensembl \| MGI Sequence Detail	541	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000032323 ankyrin repeat domain-containing protein 13C

(term hierarchy)
InterPro Domains

IPR002110 Ankyrin repeat

IPR036770 Ankyrin repeat-containing domain superfamily

IPR021832 Ankyrin repeat domain-containing protein 13

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All nucleic 12

cDNA 12

Microarray probesets 3

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MGI:2139891

Summaries

All 32

Developmental Gene Expression 1

Gene Ontology 4

Phenotypes 11
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Ankrd13c:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32499	Chr3:157652591-157652630 (+)	-265 bp
Tssr32500	Chr3:157652632-157652678 (+)	-221 bp
Tssr32501	Chr3:157652684-157652703 (+)	-182 bp
Tssr32502	Chr3:157652850-157652881 (+)	-10 bp
Tssr32503	Chr3:157652882-157652897 (+)	14 bp
Tssr32504	Chr3:157653132-157653147 (+)	264 bp
Tssr32505	Chr3:157699242-157699257 (+)	46,374 bp
Tssr32506	Chr3:157699263-157699289 (+)	46,400 bp
Tssr32507	Chr3:157699295-157699306 (+)	46,425 bp
Tssr32508	Chr3:157699355-157699368 (+)	46,486 bp
Tssr32509	Chr3:157712270-157712274 (+)	59,396 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24