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AI606473 Gene Detail
Summary
  • Symbol
    AI606473
  • Name
    expressed sequence AI606473
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2139767
    NCBI Gene: 99686
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr3:154036458-154039891 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 79.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    129 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139767
 lncRNA gene Chr3:154036458-154040324 (+)
129S1/SvImJ MGP_129S1SvImJ_G0015530
 unclassified non-coding RNA gene Chr3:158345388-158348810 (+)
A/J MGP_AJ_G0015507
 unclassified non-coding RNA gene Chr3:152556890-152560323 (+)
AKR/J MGP_AKRJ_G0015471
 unclassified non-coding RNA gene Chr3:156641790-156645201 (+)
BALB/cJ MGP_BALBcJ_G0015469
 unclassified non-coding RNA gene Chr3:152367528-152370939 (+)
C3H/HeJ MGP_C3HHeJ_G0015292
 unclassified non-coding RNA gene Chr3:157015051-157018432 (+)
C57BL/6NJ MGP_C57BL6NJ_G0015923
 unclassified non-coding RNA gene Chr3:163508290-163511719 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0013658
 unclassified non-coding RNA gene Chr3:147324377-147327787 (+)
CAST/EiJ MGP_CASTEiJ_G0014846
 unclassified non-coding RNA gene Chr3:157137942-157141369 (+)
CBA/J MGP_CBAJ_G0015273
 unclassified non-coding RNA gene Chr3:169392578-169395989 (+)
DBA/2J MGP_DBA2J_G0015367
 unclassified non-coding RNA gene Chr3:151630396-151633805 (+)
FVB/NJ MGP_FVBNJ_G0015374
 unclassified non-coding RNA gene Chr3:149007566-149010985 (+)
LP/J MGP_LPJ_G0015446
 unclassified non-coding RNA gene Chr3:159659471-159662877 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0015398
 unclassified non-coding RNA gene Chr3:177835702-177839113 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0015964
 unclassified non-coding RNA gene Chr3:156282675-156286065 (+)
PWK/PhJ MGP_PWKPhJ_G0014632
 unclassified non-coding RNA gene Chr3:151553964-151557444 (+)
SPRET/EiJ MGP_SPRETEiJ_G0014420
 unclassified non-coding RNA gene Chr3:154444229-154447929 (+)
WSB/EiJ MGP_WSBEiJ_G0014952
 unclassified non-coding RNA gene Chr3:157258483-157261907 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    803
  • Tissues
    97
  • cDNA Data
    9
  • Literature Summary
    4
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000093738 Ensembl Gene Model | MGI Sequence Detail 3434 C57BL/6J ±  kb
transcript ENSMUST00000177201 Ensembl | MGI Sequence Detail 1731 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 11
    cDNA 9
    Primer pair 1
    Other 1

    Microarray probesets 2
References
more
  • Summaries
    All 15
    Developmental Gene Expression 4
  • Earliest
    J:122989 Visel A, et al., GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6
  • Latest
    J:241394 Mattiske T, et al., Embryonic forebrain transcriptome of mice with polyalanine expansion mutations in the ARX homeobox gene. Hum Mol Genet. 2016 Dec 15;25(24):5433-5443
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/05/2024
MGI 6.24 		The Jackson Laboratory