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AW011738 Gene Detail
Summary
  • Symbol
    AW011738
  • Name
    expressed sequence AW011738
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2140540
    NCBI Gene: 100382
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr4:156287741-156290485 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 4, 88.62 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    339 from dbSNP Build 142
  • Strain Annotations
    16
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2140540
 lncRNA gene Chr4:156287727-156295020 (+)
129S1/SvImJ MGP_129S1SvImJ_G0029249
 protein coding gene Chr4:160572912-160574767 (+)
A/J MGP_AJ_G0029214
 protein coding gene Chr4:153808182-153810031 (+)
AKR/J MGP_AKRJ_G0029162
 protein coding gene Chr4:157997808-157999657 (+)
BALB/cJ MGP_BALBcJ_G0029230
 protein coding gene Chr4:154284295-154286017 (+)
C3H/HeJ MGP_C3HHeJ_G0028951
 protein coding gene Chr4:158572230-158574079 (+)
C57BL/6NJ MGP_C57BL6NJ_G0029679
 protein coding gene Chr4:166274957-166276804 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0028363
 protein coding gene Chr4:155990959-155992799 (+)
CBA/J MGP_CBAJ_G0028913
 protein coding gene Chr4:171318878-171320726 (+)
DBA/2J MGP_DBA2J_G0029062
 protein coding gene Chr4:153827887-153829736 (+)
FVB/NJ MGP_FVBNJ_G0029025
 protein coding gene Chr4:153077467-153079314 (+)
LP/J MGP_LPJ_G0029152
 protein coding gene Chr4:160522334-160524184 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0029052
 protein coding gene Chr4:174091245-174093092 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0029711
 protein coding gene Chr4:158633895-158635744 (+)
PWK/PhJ MGP_PWKPhJ_G0028083
 protein coding gene Chr4:149970818-149972668 (+)
SPRET/EiJ no annotation
WSB/EiJ MGP_WSBEiJ_G0028443
 protein coding gene Chr4:158812325-158814169 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    12
Sequences &
Gene Models
less
  • All Sequences
    38
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100382 NCBI Gene Model | MGI Sequence Detail 2745 C57BL/6J ±  kb
transcript NR_030671 RefSeq | MGI Sequence Detail 2745 C57BL/6  
polypeptide Q3U0L7 UniProt | EBI | MGI Sequence Detail 162 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 3
References
more
  • Summaries
    All 14
  • Earliest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory