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Ccdc60 Gene Detail
Summary
  • Symbol
    Ccdc60
  • Name
    coiled-coil domain containing 60
  • Feature Type
    protein coding gene
  • IDs
    MGI:2141043
    NCBI Gene: 269693
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:116263640-116427059 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 56.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    4859 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2141043
 protein coding gene Chr5:116262700-116427059 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029980
 protein coding gene Chr5:119078116-119263951 (-)
A/J MGP_AJ_G0029944
 protein coding gene Chr5:114308547-114472319 (-)
AKR/J MGP_AKRJ_G0029883
 protein coding gene Chr5:117979003-118151028 (-)
BALB/cJ MGP_BALBcJ_G0029955
 protein coding gene Chr5:115717554-115881129 (-)
C3H/HeJ MGP_C3HHeJ_G0029675
 protein coding gene Chr5:118495838-118671384 (-)
C57BL/6NJ MGP_C57BL6NJ_G0030410
 protein coding gene Chr5:123642386-123821066 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027636
 protein coding gene Chr5:109083229-109249455 (-)
CAST/EiJ MGP_CASTEiJ_G0029084
 protein coding gene Chr5:117461373-117641403 (-)
CBA/J MGP_CBAJ_G0029643
 protein coding gene Chr5:128393819-128581694 (-)
DBA/2J MGP_DBA2J_G0029793
 protein coding gene Chr5:114400607-114564993 (-)
FVB/NJ MGP_FVBNJ_G0029749
 protein coding gene Chr5:113226359-113400864 (-)
LP/J MGP_LPJ_G0029881
 protein coding gene Chr5:119622383-119785738 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029780
 protein coding gene Chr5:132701153-132882491 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030451
 protein coding gene Chr5:117466122-117646061 (-)
PWK/PhJ MGP_PWKPhJ_G0028797
 protein coding gene Chr5:113063682-113225967 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028635
 protein coding gene Chr5:115014284-115189475 (-)
WSB/EiJ MGP_WSBEiJ_G0029159
 protein coding gene Chr5:118065292-118235836 (-)



Homology
more
  • Human Ortholog
    CCDC60, coiled-coil domain containing 60
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CCDC60, coiled-coil domain containing 60
  • Links
    NCBI Gene ID: 160777
    neXtProt AC: NX_Q8IWA6
    UniProt: Q8IWA6

  • Chr Location
    12q24.23; chr12:119334712-119541040 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
  • All Mutations and Alleles
    8
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    1
  • Gene trapped
    3
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Ccdc60
  • Incidental Mutations
    Mutagenetix , APF
  • Find Mice (IMSR)
    22 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    817
  • Tissues
    17
  • cDNA Data
    15
  • Literature Summary
    1
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 269693 NCBI Gene Model | MGI Sequence Detail 163420 C57BL/6J ±  kb
transcript NM_177759 RefSeq | MGI Sequence Detail 2582 C57BL/6  
polypeptide Q8C4J0 UniProt | EBI | MGI Sequence Detail 545 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 15
    cDNA 15

    Microarray probesets 1
References
more
  • Summaries
    All 25
    Developmental Gene Expression 1
    Phenotypes 9
  • Earliest
    J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory