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4933405O20Rik Gene Detail
Summary
  • Symbol
    4933405O20Rik
  • Name
    RIKEN cDNA 4933405O20 gene
  • Feature Type
    protein coding gene
  • IDs
    MGI:2142174
    NCBI Gene: 243996
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:50248938-50250276 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 32.53 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    88 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2142174
 protein coding gene Chr7:50248938-50250278 (+)
129S1/SvImJ MGP_129S1SvImJ_G0032303
 protein coding gene Chr7:51291071-51292411 (+)
A/J MGP_AJ_G0032282
 protein coding gene Chr7:50490520-50491860 (+)
AKR/J MGP_AKRJ_G0032218
 protein coding gene Chr7:51703301-51704641 (+)
BALB/cJ MGP_BALBcJ_G0032294
 protein coding gene Chr7:50158067-50159407 (+)
C3H/HeJ MGP_C3HHeJ_G0032007
 protein coding gene Chr7:52099381-52100721 (+)
C57BL/6NJ MGP_C57BL6NJ_G0032787
 protein coding gene Chr7:53619525-53620865 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0029793
 protein coding gene Chr7:53614740-53616080 (+)
CAST/EiJ MGP_CASTEiJ_G0031335
 protein coding gene Chr7:43486406-43487746 (+)
CBA/J MGP_CBAJ_G0031972
 protein coding gene Chr7:55404838-55406178 (+)
DBA/2J MGP_DBA2J_G0032129
 protein coding gene Chr7:49703241-49704581 (+)
FVB/NJ MGP_FVBNJ_G0032083
 protein coding gene Chr7:49644070-49645410 (+)
LP/J MGP_LPJ_G0032210
 protein coding gene Chr7:52237729-52239069 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0032120
 protein coding gene Chr7:54509265-54510605 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0032804
 protein coding gene Chr7:50691669-50693009 (+)
PWK/PhJ MGP_PWKPhJ_G0031055
 protein coding gene Chr7:43038414-43039754 (+)
SPRET/EiJ MGP_SPRETEiJ_G0030896
 protein coding gene Chr7:38893358-38894699 (+)
WSB/EiJ MGP_WSBEiJ_G0031453
 protein coding gene Chr7:51368854-51370194 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    4
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 243996 NCBI Gene Model | MGI Sequence Detail 1339 C57BL/6J ±  kb
transcript NM_172901 RefSeq | MGI Sequence Detail 1339 C57BL/6  
polypeptide Q8BPC6 UniProt | EBI | MGI Sequence Detail 396 Not Applicable  
For the selected sequence
Protein
Information
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  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000040293 probable isocitrate dehydrogenase [NAD] gamma 2, mitochondrial
    (term hierarchy)
  • InterPro Domains
    IPR004434 Isocitrate dehydrogenase NAD-dependent
    IPR024084 Isopropylmalate dehydrogenase-like domain
  • GlyGen
    Q8BPC6 1 site, 1 O-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 4
    cDNA 4

    Microarray probesets 5
References
more
  • Summaries
    All 20
    Gene Ontology 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:151002 Pagliarini DJ, et al., A mitochondrial protein compendium elucidates complex I disease biology. Cell. 2008 Jul 11;134(1):112-23
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory