R74862 Gene Detail

Summary

• Symbol
  R74862
• Name
  expressed sequence R74862

• Feature Type
  lncRNA gene
• IDs
  MGI:2142382
  NCBI Gene: 97423
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:142575521-142607423 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 88.09 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  756 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2142382	lncRNA gene	Chr7:142575521-142607423 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015703	unclassified non-coding RNA gene	Chr7:148302701-148334561 (-)
A/J	MGP_AJ_G0015681	unclassified non-coding RNA gene	Chr7:144003958-144035800 (-)
AKR/J	MGP_AKRJ_G0015644	unclassified non-coding RNA gene	Chr7:148049054-148080956 (-)
BALB/cJ	MGP_BALBcJ_G0015642	unclassified non-coding RNA gene	Chr7:143778804-143811879 (-)
C3H/HeJ	MGP_C3HHeJ_G0015464	unclassified non-coding RNA gene	Chr7:147816932-147848805 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016097	unclassified non-coding RNA gene	Chr7:153666473-153698345 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013826	unclassified non-coding RNA gene	Chr7:145214907-145247403 (-)
CAST/EiJ	MGP_CASTEiJ_G0015019	unclassified non-coding RNA gene	Chr7:140117776-140150377 (-)
CBA/J	MGP_CBAJ_G0015445	unclassified non-coding RNA gene	Chr7:158926101-158957961 (-)
DBA/2J	MGP_DBA2J_G0015541	unclassified non-coding RNA gene	Chr7:141978282-142010132 (-)
FVB/NJ	MGP_FVBNJ_G0015547	unclassified non-coding RNA gene	Chr7:141898908-141930743 (-)
LP/J	MGP_LPJ_G0015621	unclassified non-coding RNA gene	Chr7:149821550-149853407 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015569	unclassified non-coding RNA gene	Chr7:159521469-159553327 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016139	unclassified non-coding RNA gene	Chr7:147017636-147049478 (-)
PWK/PhJ	MGP_PWKPhJ_G0014801	unclassified non-coding RNA gene	Chr7:135279746-135311878 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014590	unclassified non-coding RNA gene	Chr7:133822976-133854811 (-)
WSB/EiJ	MGP_WSBEiJ_G0015124	unclassified non-coding RNA gene	Chr7:148018144-148049988 (-)

Homology

• Gene Tree
  R74862
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  15

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  3

• Ensembl
  ENSMUSG00000059277 (Evidence)
• NCBI Gene
  97423

Representative Sequences			Length	Strain/Species
genomic	97423	NCBI Gene Model | MGI Sequence Detail	31903	C57BL/6J
transcript	NR_110354	RefSeq | MGI Sequence Detail	2751	C57BL/6

Molecular
Reagents

• All nucleic 15

  cDNA 15

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for R74862:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75917	Chr7:142607116-142607196 (-)	267 bp