AV064505 Gene Detail

Summary

• Symbol
  AV064505
• Name
  expressed sequence AV064505

• Feature Type
  lncRNA gene
• IDs
  MGI:2143259
  NCBI Gene: 102722
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:7669430-7695632 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 2.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  846 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2143259	lncRNA gene	Chr9:7669430-7695632 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0004604	antisense lncRNA gene	Chr9:4529657-4555881 (-)
A/J	MGP_AJ_G0004584	antisense lncRNA gene	Chr9:4633808-4661387 (-)
AKR/J	MGP_AKRJ_G0004568	antisense lncRNA gene	Chr9:4504991-4531190 (-)
BALB/cJ	MGP_BALBcJ_G0004569	antisense lncRNA gene	Chr9:4371265-4399427 (-)
C3H/HeJ	MGP_C3HHeJ_G0004518	antisense lncRNA gene	Chr9:4698423-4724642 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0004718	antisense lncRNA gene	Chr9:4701157-4730309 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004169	antisense lncRNA gene	Chr9:3893665-3920011 (-)
CAST/EiJ	MGP_CASTEiJ_G0004476	antisense lncRNA gene	Chr9:4721188-4754369 (-)
CBA/J	MGP_CBAJ_G0004512	antisense lncRNA gene	Chr9:4806559-4832742 (-)
DBA/2J	MGP_DBA2J_G0004527	antisense lncRNA gene	Chr9:4511892-4538203 (-)
FVB/NJ	MGP_FVBNJ_G0004544	antisense lncRNA gene	Chr9:4291258-4317452 (-)
LP/J	MGP_LPJ_G0004608	antisense lncRNA gene	Chr9:4579291-4609409 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004533	antisense lncRNA gene	Chr9:5570405-5596603 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004718	antisense lncRNA gene	Chr9:4503815-4530944 (-)
PWK/PhJ	MGP_PWKPhJ_G0004429	antisense lncRNA gene	Chr9:4637858-4664690 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0004370	antisense lncRNA gene	Chr9:4735778-4777563 (-)
WSB/EiJ	MGP_WSBEiJ_G0004517	antisense lncRNA gene	Chr9:4512009-4538200 (-)

Homology

• Gene Tree
  AV064505
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000086381 (Evidence)
• NCBI Gene
  102722

Representative Sequences			Length	Strain/Species
genomic	102722	NCBI Gene Model | MGI Sequence Detail	26203	C57BL/6J
transcript	NR_126562	RefSeq | MGI Sequence Detail	522	C57BL/6

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 10

  Phenotypes 1
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:157972 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome U74 Array Platform (A, B, C v2). Database Download. 2010;