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AW551984 Gene Detail
Summary
  • Symbol
    AW551984
  • Name
    expressed sequence AW551984
  • Feature Type
    protein coding gene
  • IDs
    MGI:2143322
    NCBI Gene: 244810
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:39498692-39515699 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 20.98 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    557 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2143322
 protein coding gene Chr9:39498692-39516070 (-)
129S1/SvImJ MGP_129S1SvImJ_G0034637
 protein coding gene Chr9:37719892-37737013 (-)
A/J MGP_AJ_G0034618
 protein coding gene Chr9:36778507-36795947 (-)
AKR/J MGP_AKRJ_G0034544
 protein coding gene Chr9:37483939-37502783 (-)
BALB/cJ MGP_BALBcJ_G0034609
 protein coding gene Chr9:36556401-36573514 (-)
C3H/HeJ MGP_C3HHeJ_G0034320
 protein coding gene Chr9:37955244-37973472 (-)
C57BL/6NJ MGP_C57BL6NJ_G0035131
 protein coding gene Chr9:38936884-38957288 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0032048
 protein coding gene Chr9:36455384-36475760 (-)
CAST/EiJ MGP_CASTEiJ_G0033641
 protein coding gene Chr9:37760151-37777300 (-)
CBA/J MGP_CBAJ_G0034295
 protein coding gene Chr9:40286650-40305485 (-)
DBA/2J MGP_DBA2J_G0034452
 protein coding gene Chr9:36747041-36763941 (-)
FVB/NJ MGP_FVBNJ_G0034393
 protein coding gene Chr9:35961696-35979107 (-)
LP/J MGP_LPJ_G0034534
 protein coding gene Chr9:37949025-37966358 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0034437
 protein coding gene Chr9:42248468-42265505 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0035151
 protein coding gene Chr9:37398241-37415230 (-)
PWK/PhJ MGP_PWKPhJ_G0033346
 protein coding gene Chr9:36575795-36593281 (-)
SPRET/EiJ MGP_SPRETEiJ_G0033182
 protein coding gene Chr9:37613695-37630707 (-)
WSB/EiJ MGP_WSBEiJ_G0033757
 protein coding gene Chr9:37371971-37389869 (-)



Homology
more
  • Human Ortholog
    VWA5A, von Willebrand factor A domain containing 5A
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VWA5A, von Willebrand factor A domain containing 5A
  • Synonyms
    BCSC-1, BCSC1, LOH11CR2A
  • Links
    NCBI Gene ID: 4013
    neXtProt AC: NX_O00534
    UniProt: O00534

  • Chr Location
    11q24.2; chr11:124115404-124147721 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    712
  • Tissues
    4
  • cDNA Data
    10
  • Literature Summary
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038112 Ensembl Gene Model | MGI Sequence Detail 17008 C57BL/6J ±  kb
transcript ENSMUST00000042485 Ensembl | MGI Sequence Detail 4293 Not Applicable  
polypeptide ENSMUSP00000042582 Ensembl | MGI Sequence Detail 804 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    5 Sequences
  • InterPro Domains
    IPR013694 VIT domain
    IPR036465 von Willebrand factor A-like domain superfamily
    IPR002035 von Willebrand factor, type A
  • GlyGen
    Q8BGF0 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 12
    cDNA 10
    Other 2

    Microarray probesets 5
References
more
  • Summaries
    All 21
    Developmental Gene Expression 3
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:92208 Takasato M, et al., Identification of kidney mesenchymal genes by a combination of microarray analysis and Sall1-GFP knockin mice. Mech Dev. 2004 Jun;121(6):547-57
  • Latest
    J:272619 Aydogdu N, et al., TBX2 and TBX3 act downstream of canonical WNT signaling in patterning and differentiation of the mouse ureteric mesenchyme. Development. 2018 Nov 26;145(23):dev171827
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/19/2024
MGI 6.24 		The Jackson Laboratory