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C78197 Gene Detail
Summary
  • Symbol
    C78197
  • Name
    expressed sequence C78197
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2144636
    NCBI Gene: 100504352
  • Alliance
    gene page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    Chr11:68083019-68086979 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 11, 41.44 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    204 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2144636
 lncRNA gene Chr11:68083019-68086979 (-)
129S1/SvImJ MGP_129S1SvImJ_G0002998
 antisense lncRNA gene Chr11:68528759-68532719 (-)
A/J MGP_AJ_G0002975
 antisense lncRNA gene Chr11:65965813-65969773 (-)
AKR/J MGP_AKRJ_G0002956
 antisense lncRNA gene Chr11:67933339-67937299 (-)
BALB/cJ MGP_BALBcJ_G0002962
 antisense lncRNA gene Chr11:66254742-66258702 (-)
C3H/HeJ MGP_C3HHeJ_G0002918
 antisense lncRNA gene Chr11:67957419-67961379 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003104
 antisense lncRNA gene Chr11:70624444-70628404 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0002644
 antisense lncRNA gene Chr11:62909462-62913470 (-)
CAST/EiJ MGP_CASTEiJ_G0002888
 antisense lncRNA gene Chr11:68174698-68178635 (-)
CBA/J MGP_CBAJ_G0002915
 antisense lncRNA gene Chr11:73754063-73758023 (-)
DBA/2J MGP_DBA2J_G0002922
 antisense lncRNA gene Chr11:65568365-65572325 (-)
FVB/NJ MGP_FVBNJ_G0002940
 antisense lncRNA gene Chr11:65186259-65190219 (-)
LP/J MGP_LPJ_G0002997
 antisense lncRNA gene Chr11:69105599-69109559 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0002928
 antisense lncRNA gene Chr11:74472213-74476173 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003108
 antisense lncRNA gene Chr11:68182032-68185992 (-)
PWK/PhJ MGP_PWKPhJ_G0002847
 antisense lncRNA gene Chr11:66185866-66189862 (-)
SPRET/EiJ MGP_SPRETEiJ_G0002793
 antisense lncRNA gene Chr11:68026864-68030808 (-)
WSB/EiJ MGP_WSBEiJ_G0002918
 antisense lncRNA gene Chr11:67794926-67798886 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    7
Sequences &
Gene Models
less
  • All Sequences
    27
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000087242 Ensembl Gene Model | MGI Sequence Detail 3961 C57BL/6J ±  kb
transcript ENSMUST00000152781 Ensembl | MGI Sequence Detail 3417 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 7
    cDNA 7
References
more
  • Summaries
    All 12
    Phenotypes 3
  • Earliest
    J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory