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Brd9 Gene Detail
Summary
  • Symbol
    Brd9
  • Name
    bromodomain containing 9
  • Feature Type
    protein coding gene
  • IDs
    MGI:2145317
    NCBI Gene: 105246
  • Alliance
    gene page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:74085930-74109014 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 40.15 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    637 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2145317
 protein coding gene Chr13:74085920-74109014 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020754
 protein coding gene Chr13:74427011-74450392 (+)
A/J MGP_AJ_G0020710
 protein coding gene Chr13:71763576-71786527 (+)
AKR/J MGP_AKRJ_G0020684
 protein coding gene Chr13:74013806-74036928 (+)
BALB/cJ MGP_BALBcJ_G0020707
 protein coding gene Chr13:72256474-72279810 (+)
C3H/HeJ MGP_C3HHeJ_G0020501
 protein coding gene Chr13:73697971-73721357 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021144
 protein coding gene Chr13:76889987-76913820 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018711
 protein coding gene Chr13:68585007-68608964 (+)
CAST/EiJ MGP_CASTEiJ_G0020018
 protein coding gene Chr13:72770950-72794390 (+)
CBA/J MGP_CBAJ_G0020460
 protein coding gene Chr13:79751661-79774632 (+)
DBA/2J MGP_DBA2J_G0020585
 protein coding gene Chr13:71582582-71605656 (+)
FVB/NJ MGP_FVBNJ_G0020565
 protein coding gene Chr13:70608095-70631423 (+)
LP/J MGP_LPJ_G0020658
 protein coding gene Chr13:74666670-74689636 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020593
 protein coding gene Chr13:78167020-78192919 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021183
 protein coding gene Chr13:73327817-73354796 (+)
PWK/PhJ MGP_PWKPhJ_G0019772
 protein coding gene Chr13:70320787-70344062 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019595
 protein coding gene Chr13:69801606-69827588 (+)
WSB/EiJ MGP_WSBEiJ_G0020076
 protein coding gene Chr13:73886108-73910048 (+)



Homology
more
  • Human Ortholog
    BRD9, bromodomain containing 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    BRD9, bromodomain containing 9
  • Synonyms
    LAVS3040, PRO9856, SMARCI2
  • Links
    NCBI Gene ID: 65980
    neXtProt AC: NX_Q9H8M2
    UniProt: Q9H8M2

  • Chr Location
    5p15.33; chr5:850291-892801 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 1 allele in 1 genetic background
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    753
  • Tissues
    43
  • cDNA Data
    67
  • Literature Summary
    5
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000057649 Ensembl Gene Model | MGI Sequence Detail 23085 C57BL/6J ±  kb
    transcript ENSMUST00000099384 Ensembl | MGI Sequence Detail 2407 Not Applicable  
    polypeptide ENSMUSP00000096982 Ensembl | MGI Sequence Detail 597 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 67

      Microarray probesets 3
    References
    more
    • Summaries
      All 43
      Developmental Gene Expression 5
      Gene Ontology 6
      Phenotypes 13
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:352239 Du J, et al., ARID1A safeguards the canalization of the cell fate decision during osteoclastogenesis. Nat Commun. 2024 Jul 17;15(1):5994
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/05/2024
    MGI 6.24     		The Jackson Laboratory