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Tafa5 Gene Detail
Summary
  • Symbol
    Tafa5
  • Name
    TAFA chemokine like family member 5
  • Synonyms
    Fam19a5, Tara-5
  • Feature Type
    protein coding gene
  • IDs
    MGI:2146182
    NCBI Gene: 106014
  • Alliance
    gene page
  • Transcription Start Sites
    15 TSS
Location &
Maps
more
  • Sequence Map
    Chr15:87428500-87643565 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 15, 42.10 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    6252 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2146182
 protein coding gene Chr15:87428405-87643565 (+)
129S1/SvImJ MGP_129S1SvImJ_G0022204
 protein coding gene Chr15:88683834-88827328 (+)
A/J MGP_AJ_G0022163
 protein coding gene Chr15:85318233-85455309 (+)
AKR/J MGP_AKRJ_G0022138
 protein coding gene Chr15:87840917-87976172 (+)
BALB/cJ MGP_BALBcJ_G0022169
 protein coding gene Chr15:85439013-85573560 (+)
C3H/HeJ MGP_C3HHeJ_G0021939
 protein coding gene Chr15:87799393-87937663 (+)
C57BL/6NJ MGP_C57BL6NJ_G0022614
 protein coding gene Chr15:91930080-92069388 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0020139
 protein coding gene Chr15:81588802-81726384 (+)
CAST/EiJ MGP_CASTEiJ_G0021461
 protein coding gene Chr15:88600349-88738516 (+)
CBA/J MGP_CBAJ_G0021906
 protein coding gene Chr15:95062902-95205095 (+)
DBA/2J MGP_DBA2J_G0022033
 protein coding gene Chr15:84763600-84896975 (+)
FVB/NJ MGP_FVBNJ_G0022012
 protein coding gene Chr15:83842450-83978205 (+)
LP/J MGP_LPJ_G0022104
 protein coding gene Chr15:88834683-88971531 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0022032
 protein coding gene Chr15:99576817-99712535 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0022629
 protein coding gene Chr15:87866403-88003455 (+)
PWK/PhJ MGP_PWKPhJ_G0021202
 protein coding gene Chr15:84803576-84942928 (+)
SPRET/EiJ MGP_SPRETEiJ_G0021036
 protein coding gene Chr15:87594507-87734666 (+)
WSB/EiJ MGP_WSBEiJ_G0021510
 protein coding gene Chr15:88338858-88480203 (+)



Homology
more
  • Human Ortholog
    TAFA5, TAFA chemokine like family member 5
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TAFA5, TAFA chemokine like family member 5
  • Synonyms
    FAM19A5, QLLK5208, TAFA-5, UNQ5208
  • Links
    NCBI Gene ID: 25817
    neXtProt AC: NX_Q7Z5A7
    UniProt: Q7Z5A7

  • Chr Location
    22q13.32; chr22:48489553-48850912 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    24 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    20
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    776
  • Tissues
    8
  • cDNA Data
    17
  • Literature Summary
    9
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000054863 Ensembl Gene Model | MGI Sequence Detail 215066 C57BL/6J ±  kb
transcript ENSMUST00000230414 Ensembl | MGI Sequence Detail 2649 Not Applicable  
polypeptide ENSMUSP00000155322 Ensembl | MGI Sequence Detail 132 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 17
    cDNA 17

    Microarray probesets 5
Other
Accession IDs
less
MGI:6276247
References
more
  • Summaries
    All 55
    Developmental Gene Expression 9
    Diseases 1
    Gene Ontology 4
    Phenotypes 24
  • Earliest
    J:7688 Lane PW, et al., Association of megacolon with a new dominant spotting gene (Dom) in the mouse. J Hered. 1984 Nov-Dec;75(6):435-9
  • Latest
    J:307252 Kang D, et al., Brain-specific chemokine FAM19A5 induces hypothalamic inflammation. Biochem Biophys Res Commun. 2020 Mar 19;523(4):829-834
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory