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A330093E20Rik Gene Detail
Summary
  • Symbol
    A330093E20Rik
  • Name
    RIKEN cDNA A330093E20 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2147325
    NCBI Gene: 107003
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr18:45816554-46178327 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 18, 24.34 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    9718 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2147325
 lncRNA gene Chr18:45816554-46178327 (-)
129S1/SvImJ MGP_129S1SvImJ_G0003452
 antisense lncRNA gene Chr18:44454973-44675413 (-)
A/J MGP_AJ_G0003431
 antisense lncRNA gene Chr18:42847176-43060151 (-)
AKR/J MGP_AKRJ_G0003411
 antisense lncRNA gene Chr18:44058956-44274169 (-)
BALB/cJ MGP_BALBcJ_G0003420
 antisense lncRNA gene Chr18:42959229-43166073 (-)
C3H/HeJ MGP_C3HHeJ_G0003369
 antisense lncRNA gene Chr18:44119737-44334280 (-)
C57BL/6NJ MGP_C57BL6NJ_G0003558
 antisense lncRNA gene Chr18:46013319-46242791 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0003072
 antisense lncRNA gene Chr18:42753517-42939401 (-)
CAST/EiJ MGP_CASTEiJ_G0003332
 antisense lncRNA gene Chr18:44065348-44290959 (-)
CBA/J MGP_CBAJ_G0003366
 antisense lncRNA gene Chr18:47245142-47498980 (-)
DBA/2J MGP_DBA2J_G0003374
 antisense lncRNA gene Chr18:42451998-42666086 (-)
FVB/NJ MGP_FVBNJ_G0003392
 antisense lncRNA gene Chr18:42062161-42265520 (-)
LP/J MGP_LPJ_G0003446
 antisense lncRNA gene Chr18:44503989-44713832 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0003380
 antisense lncRNA gene Chr18:48615955-48849874 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0003561
 antisense lncRNA gene Chr18:43952778-44158186 (-)
PWK/PhJ MGP_PWKPhJ_G0003288
 antisense lncRNA gene Chr18:42645575-42846925 (-)
SPRET/EiJ MGP_SPRETEiJ_G0003233
 antisense lncRNA gene Chr18:44135356-44354373 (-)
WSB/EiJ MGP_WSBEiJ_G0003366
 antisense lncRNA gene Chr18:43849077-44059325 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    29
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 107003 NCBI Gene Model | MGI Sequence Detail 361774 C57BL/6J ±  kb
transcript NR_040342 RefSeq | MGI Sequence Detail 2407 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 11
    Phenotypes 1
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:327181 Lewis MA, et al., Identification and characterisation of spontaneous mutations causing deafness from a targeted knockout programme. BMC Biol. 2022 Mar 17;20(1):67
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory