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Vmn1r54 Gene Detail
Summary
  • Symbol
    Vmn1r54
  • Name
    vomeronasal 1 receptor 54
  • Synonyms
    V1ra9, VN7
  • Feature Type
    protein coding gene
  • IDs
    MGI:2148514
    NCBI Gene: 113851
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:90246088-90247035 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 40.10 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    43 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2148514
 protein coding gene Chr6:90223282-90248195 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031032
 protein coding gene Chr6:91798023-91798961 (+)
A/J MGP_AJ_G0031014
 protein coding gene Chr6:89482003-89483250 (-)
AKR/J MGP_AKRJ_G0030932
 protein coding gene Chr6:90763991-90773897 (+)
BALB/cJ MGP_BALBcJ_G0031012
 protein coding gene Chr6:88257808-88258671 (+)
C3H/HeJ MGP_C3HHeJ_G0030696
 protein coding gene Chr6:93679370-93680452 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031471
 protein coding gene Chr6:94218671-94219609 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0030119
 protein coding gene Chr6:90885802-90886373 (+)
CBA/J MGP_CBAJ_G0030698
 protein coding gene Chr6:97745896-97747632 (+)
DBA/2J no annotation
FVB/NJ MGP_FVBNJ_G0030805
 protein coding gene Chr6:86707385-86708323 (+)
LP/J MGP_LPJ_G0030931
 protein coding gene Chr6:91764151-91768693 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030839
 protein coding gene Chr6:101833321-101835075 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031498
 protein coding gene Chr6:90631154-90632092 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0029664
 protein coding gene Chr6:89495063-89496133 (+)
WSB/EiJ MGP_WSBEiJ_G0030203
 protein coding gene Chr6:91080478-91082634 (+)



Homology
more
  • Human Ortholog
    VN1R17P, vomeronasal 1 receptor 17 pseudogene
  • Vertebrate Orthologs
    1
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    VN1R17P, vomeronasal 1 receptor 17 pseudogene
  • Synonyms
    GPCR
  • Links
    NCBI Gene ID: 441931
    UniProt: Q8TDU5

  • Chr Location
    1q44; chr1:247236868-247237957 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    12 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 113851 NCBI Gene Model | MGI Sequence Detail 948 C57BL/6J ±  kb
transcript NM_053224 RefSeq | MGI Sequence Detail 948 129X1/SvJ  
polypeptide Q9EPB8 UniProt | EBI | MGI Sequence Detail 315 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 1
    Genomic 1

    Microarray probesets 2
References
more
  • Summaries
    All 29
    Gene Ontology 4
    Phenotypes 12
  • Earliest
    J:21726 Champion KM, et al., Identification of a heritable deficiency of the folate-dependent enzyme 10-formyltetrahydrofolate dehydrogenase in mice. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11338-42
  • Latest
    J:337922 Weiss J, et al., Sensing and avoiding sick conspecifics requires Galphai2(+) vomeronasal neurons. BMC Biol. 2023 Jul 10;21(1):152
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
10/29/2024
MGI 6.24 		The Jackson Laboratory