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Palmd Gene Detail
Summary
  • Symbol
    Palmd
  • Name
    palmdelphin
  • Synonyms
    4631423C22Rik, PALML
  • Feature Type
    protein coding gene
  • IDs
    MGI:2148896
    NCBI Gene: 114301
  • Alliance
    gene page
  • Transcription Start Sites
    13 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:116711907-116762636 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 50.49 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    1634 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2148896
 protein coding gene Chr3:116711907-116762896 (-)
129S1/SvImJ MGP_129S1SvImJ_G0027820
 protein coding gene Chr3:118867621-118920387 (-)
A/J MGP_AJ_G0027778
 protein coding gene Chr3:114972851-115023511 (-)
AKR/J MGP_AKRJ_G0027744
 protein coding gene Chr3:117867765-117918685 (-)
BALB/cJ MGP_BALBcJ_G0027790
 protein coding gene Chr3:114805203-114856613 (-)
C3H/HeJ MGP_C3HHeJ_G0027521
 protein coding gene Chr3:118253147-118305022 (-)
C57BL/6NJ MGP_C57BL6NJ_G0028236
 protein coding gene Chr3:123215362-123267338 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0025575
 protein coding gene Chr3:110628503-110679273 (-)
CAST/EiJ MGP_CASTEiJ_G0026977
 protein coding gene Chr3:117515285-117570268 (-)
CBA/J MGP_CBAJ_G0027496
 protein coding gene Chr3:127427522-127485712 (-)
DBA/2J MGP_DBA2J_G0027637
 protein coding gene Chr3:114183640-114235976 (-)
FVB/NJ MGP_FVBNJ_G0027605
 protein coding gene Chr3:111819523-111872778 (-)
LP/J MGP_LPJ_G0027747
 protein coding gene Chr3:120391573-120445732 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0027635
 protein coding gene Chr3:134809951-134862539 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0028292
 protein coding gene Chr3:117402571-117453443 (-)
PWK/PhJ MGP_PWKPhJ_G0026703
 protein coding gene Chr3:113829301-113881031 (-)
SPRET/EiJ MGP_SPRETEiJ_G0026525
 protein coding gene Chr3:115416040-115469369 (-)
WSB/EiJ MGP_WSBEiJ_G0027057
 protein coding gene Chr3:118109813-118165508 (-)



Homology
more
  • Human Ortholog
    PALMD, palmdelphin
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PALMD, palmdelphin
  • Synonyms
    C1orf11, PALML
  • Links
    NCBI Gene ID: 54873
    neXtProt AC: NX_Q9NP74
    UniProt: Q9NP74

  • Chr Location
    1p21.2; chr1:99646113-99694541 (+)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotypes from 2 alleles in 2 genetic backgrounds
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    4
  • Gene trapped
    1
  • Radiation induced
    1
  • Targeted
    2
  • Genomic Mutations
    2 involving Palmd
  • Incidental Mutations
    Mutagenetix , APF
  • Find Mice (IMSR)
    38 strains or lines available
Mice homozygous for a null allele exhibit fewer endothelial cells in the descending aorta display a perinuclear actin cap.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    735
  • Tissues
    26
  • cDNA Data
    58
  • Literature Summary
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000033377 Ensembl Gene Model | MGI Sequence Detail 50730 C57BL/6J ±  kb
transcript ENSMUST00000119557 Ensembl | MGI Sequence Detail 3305 Not Applicable  
polypeptide ENSMUSP00000113107 Ensembl | MGI Sequence Detail 551 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 61
    cDNA 59
    Primer pair 1
    Other 1

    Microarray probesets 3
Other
Accession IDs
less
MGI:1913938
References
more
  • Summaries
    All 44
    Developmental Gene Expression 5
    Diseases 1
    Gene Ontology 7
    Phenotypes 12
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory