5033404E19Rik Pseudogene Detail

Summary

• Symbol
  5033404E19Rik
• Name
  RIKEN cDNA 5033404E19 gene

• Feature Type
  pseudogene
• IDs
  MGI:2149700
  NCBI Gene: 114668
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:185229585-185230214 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 89.54 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  153 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2149700	pseudogene	Chr1:185229503-185230214 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0039650	pseudogene	Chr1:192225942-192241338 (+)
A/J	MGP_AJ_G0039649	pseudogene	Chr1:184364429-184375054 (+)
AKR/J	MGP_AKRJ_G0039573	pseudogene	Chr1:189799865-189812763 (+)
BALB/cJ	MGP_BALBcJ_G0039623	pseudogene	Chr1:185006343-185017163 (+)
C3H/HeJ	MGP_C3HHeJ_G0039286	pseudogene	Chr1:190667715-190679856 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0040175	pseudogene	Chr1:198358184-198370727 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036820	pseudogene	Chr1:175351453-175362827 (+)
CAST/EiJ	MGP_CASTEiJ_G0038403	pseudogene	Chr1:190097374-190115052 (+)
CBA/J	MGP_CBAJ_G0039253	pseudogene	Chr1:205755524-205768710 (+)
DBA/2J	MGP_DBA2J_G0039446	pseudogene	Chr1:183122397-183134000 (+)
FVB/NJ	MGP_FVBNJ_G0039401	pseudogene	Chr1:181224066-181234973 (+)
LP/J	MGP_LPJ_G0039488	pseudogene	Chr1:193376805-193387579 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039406	pseudogene	Chr1:212626551-212638269 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040279	pseudogene	Chr1:189670439-189681260 (+)
PWK/PhJ	MGP_PWKPhJ_G0038080	pseudogene	Chr1:182336340-182347366 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0037829	pseudogene	Chr1:188627545-188639907 (+)
WSB/EiJ	MGP_WSBEiJ_G0038637	pseudogene	Chr1:189833971-189845884 (+)

Homology

• Gene Tree
  5033404E19Rik
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000102185 (Evidence)
• NCBI Gene
  114668

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000102185	Ensembl Gene Model | MGI Sequence Detail	630	C57BL/6J
transcript	ENSMUST00000192616	Ensembl | MGI Sequence Detail	630	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 7
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:144087 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Genome 430 2.0 Array Platform. Database Download. 2009;