Glcci1 Gene Detail

Summary

• Symbol
  Glcci1
• Name
  glucocorticoid induced transcript 1
• Synonyms
  2310047L21Rik, A130036A18Rik, Fam117c, GIG18, Tssn1

• Feature Type
  protein coding gene
• IDs
  MGI:2179717
  NCBI Gene: 170772
• Alliance
  gene page
• Transcription Start Sites
  17 TSS

Location &
Maps

• Sequence Map
  Chr6:8509600-8597548 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 4.38 cM, cytoband A1
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  2064 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2179717	protein coding gene	Chr6:8509600-8597549 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0030451	protein coding gene	Chr6:5449019-5528356 (+)
A/J	MGP_AJ_G0030424	protein coding gene	Chr6:5272213-5351294 (+)
AKR/J	MGP_AKRJ_G0030351	protein coding gene	Chr6:5452019-5545855 (+)
BALB/cJ	MGP_BALBcJ_G0030433	protein coding gene	Chr6:5230551-5317643 (+)
C3H/HeJ	MGP_C3HHeJ_G0030147	protein coding gene	Chr6:5343673-5432249 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0030888	protein coding gene	Chr6:5607367-5700150 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0028099	protein coding gene	Chr6:4769693-4846388 (+)
CAST/EiJ	MGP_CASTEiJ_G0029548	protein coding gene	Chr6:5331211-5416648 (+)
CBA/J	MGP_CBAJ_G0030125	protein coding gene	Chr6:5747001-5847163 (+)
DBA/2J	MGP_DBA2J_G0030269	protein coding gene	Chr6:5197113-5283607 (+)
FVB/NJ	MGP_FVBNJ_G0030223	protein coding gene	Chr6:5168204-5252272 (+)
LP/J	MGP_LPJ_G0030356	protein coding gene	Chr6:5416121-5508620 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0030259	protein coding gene	Chr6:5837669-5953540 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0030918	protein coding gene	Chr6:5329527-5418650 (+)
PWK/PhJ	MGP_PWKPhJ_G0029263	protein coding gene	Chr6:5090342-5170148 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0029099	protein coding gene	Chr6:5387013-5468653 (+)
WSB/EiJ	MGP_WSBEiJ_G0029625	protein coding gene	Chr6:5325679-5411990 (+)

Homology

• Human Ortholog
  GLCCI1, glucocorticoid induced 1

• Vertebrate Orthologs
  3

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  GLCCI1, glucocorticoid induced 1
  
• Synonyms
  FAM117C, GCTR, GIG18, TSSN1
• Links
  HGNC:18713

  NCBI Gene ID: 113263

  neXtProt AC: NX_Q86VQ1

  UniProt: Q86VQ1

  
  
• Chr Location
  7p21.3; chr7:7968796-8094272 (+)  GRCh38

---

• MGI Vertebrate Homology
  Glcci1 stringent orthology
  1 human;1 mouse;1 rat;1 zebrafish
  
• HCOP
  vertebrate homology predictions: GLCCI1
• Gene Tree
  Glcci1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Endonuclease-mediated
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  25 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  5
• GO References
  3

Expression

• Assay Results
  840
• Tissues
  47
• cDNA Data
  24
• Literature Summary
  13

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas
• Other Vertebrate Links
  GEISHA GLCCI1
  Xenbase glcci1
  ZFIN glcci1a

Sequences &
Gene Models

• All Sequences
  66
• RefSeq
  6
• UniProt
  5
• CCDS
  CCDS19910.2, CCDS71724.1, CCDS71725.1

• Ensembl
  ENSMUSG00000029638 (Evidence)
• NCBI Gene
  170772

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000029638	Ensembl Gene Model | MGI Sequence Detail	87949	C57BL/6J
transcript	ENSMUST00000064285	Ensembl | MGI Sequence Detail	6200	Not Applicable
polypeptide	ENSMUSP00000069444	Ensembl | MGI Sequence Detail	538	Not Applicable

Protein
Information

• UniProt
  5 Sequences
• Protein Ontology
  PR:000008020 glucocorticoid-induced transcript 1 protein
  (term hierarchy)
• InterPro Domains
  IPR026642 Glucocorticoid-induced transcript 1/FAM117

Molecular
Reagents

• All nucleic 32

  cDNA 26

  Primer pair 5

  Other 1

  
  

  Microarray probesets 6

Other
Accession IDs

MGI:1923716, MGI:2384658, MGI:2442244

References

• Summaries
  All 38

  Developmental Gene Expression 13

  Gene Ontology 3

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:333201 Takada M, et al., Involvement of GLCCI1 in mouse spermatogenesis. FASEB J. 2023 Jan;37(1):e22680

TSS for Glcci1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr54907	Chr6:8509387-8509437 (+)	-188 bp
Tssr54908	Chr6:8509444-8509449 (+)	-153 bp
Tssr54909	Chr6:8509783-8509794 (+)	189 bp
Tssr54910	Chr6:8509797-8509800 (+)	199 bp
Tssr54911	Chr6:8509801-8509815 (+)	208 bp
Tssr54912	Chr6:8509828-8509848 (+)	238 bp
Tssr54913	Chr6:8509857-8509875 (+)	266 bp
Tssr54914	Chr6:8509908-8509929 (+)	319 bp
Tssr54917	Chr6:8521884-8521895 (+)	12,290 bp
Tssr54918	Chr6:8524169-8524170 (+)	14,570 bp
Tssr54919	Chr6:8527260-8527268 (+)	17,664 bp
Tssr1777	Chr6:8532085-8532089 (+)	22,487 bp
Tssr54920	Chr6:8544573-8544587 (+)	34,980 bp
Tssr54921	Chr6:8545325-8545329 (+)	35,727 bp
Tssr54922	Chr6:8550370-8550375 (+)	40,773 bp
Tssr54923	Chr6:8580634-8580635 (+)	71,035 bp
Tssr54924	Chr6:8594279-8594288 (+)	84,684 bp