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Atp13a1 Gene Detail
Summary
  • Symbol
    Atp13a1
  • Name
    ATPase type 13A1
  • Synonyms
    Atp13a, catp, Cgi152
  • Feature Type
    protein coding gene
  • IDs
    MGI:2180801
    NCBI Gene: 170759
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr8:70243813-70260399 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 8, 33.88 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    339 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2180801
 protein coding gene Chr8:70243813-70260399 (+)
129S1/SvImJ MGP_129S1SvImJ_G0033676
 protein coding gene Chr8:70004409-70020936 (+)
A/J MGP_AJ_G0033659
 protein coding gene Chr8:67167871-67184599 (+)
AKR/J MGP_AKRJ_G0033584
 protein coding gene Chr8:69071136-69087501 (+)
BALB/cJ MGP_BALBcJ_G0033655
 protein coding gene Chr8:67391045-67407572 (+)
C3H/HeJ MGP_C3HHeJ_G0033365
 protein coding gene Chr8:69726965-69743384 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034172
 protein coding gene Chr8:72665794-72682387 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031116
 protein coding gene Chr8:61994252-62011153 (+)
CAST/EiJ MGP_CASTEiJ_G0032690
 protein coding gene Chr8:69193659-69210203 (+)
CBA/J MGP_CBAJ_G0033343
 protein coding gene Chr8:75322445-75339184 (+)
DBA/2J MGP_DBA2J_G0033497
 protein coding gene Chr8:66894420-66910892 (+)
FVB/NJ MGP_FVBNJ_G0033438
 protein coding gene Chr8:65987304-66004007 (+)
LP/J MGP_LPJ_G0033584
 protein coding gene Chr8:70066823-70083372 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0033482
 protein coding gene Chr8:77979649-77996226 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034190
 protein coding gene Chr8:69252113-69269617 (+)
PWK/PhJ MGP_PWKPhJ_G0032398
 protein coding gene Chr8:66176770-66193536 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032234
 protein coding gene Chr8:68234586-68250978 (+)
WSB/EiJ MGP_WSBEiJ_G0032805
 protein coding gene Chr8:69620475-69636936 (+)



Homology
more
  • Human Ortholog
    ATP13A1, ATPase 13A1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ATP13A1, ATPase 13A1
  • Synonyms
    ATP13A, CGI-152
  • Links
    NCBI Gene ID: 57130
    neXtProt AC: NX_Q9HD20
    UniProt: Q9HD20

  • Chr Location
    19p13.11; chr19:19645198-19663676 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    9 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    18
  • GO References
    7
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    126
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 170759 NCBI Gene Model | MGI Sequence Detail 16587 C57BL/6J ±  kb
    transcript NM_133224 RefSeq | MGI Sequence Detail 3915 C57BL/6  
    polypeptide Q9EPE9 UniProt | EBI | MGI Sequence Detail 1200 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 127
      cDNA 126
      Primer pair 1

      Microarray probesets 3
    References
    more
    • Summaries
      All 38
      Gene Ontology 7
      Phenotypes 9
    • Earliest
      J:92813 Schultheis PJ, et al., Characterization of the P(5) subfamily of P-type transport ATPases in mice. Biochem Biophys Res Commun. 2004 Oct 22;323(3):731-8
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory