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Ell2 Gene Detail
Summary
  • Symbol
    Ell2
  • Name
    elongation factor for RNA polymerase II 2
  • Feature Type
    protein coding gene
  • IDs
    MGI:2183438
    NCBI Gene: 192657
  • Alliance
    gene page
  • Transcription Start Sites
    24 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:75855603-75920480 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 40.93 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1331 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2183438
 protein coding gene Chr13:75854876-75920483 (+)
129S1/SvImJ MGP_129S1SvImJ_G0020771
 protein coding gene Chr13:76242506-76314485 (+)
A/J MGP_AJ_G0020727
 protein coding gene Chr13:73644516-73710637 (+)
AKR/J MGP_AKRJ_G0020700
 protein coding gene Chr13:75879041-75944441 (+)
BALB/cJ MGP_BALBcJ_G0020723
 protein coding gene Chr13:74125935-74190766 (+)
C3H/HeJ MGP_C3HHeJ_G0020517
 protein coding gene Chr13:75583949-75654142 (+)
C57BL/6NJ MGP_C57BL6NJ_G0021160
 protein coding gene Chr13:78819853-78890835 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0018728
 protein coding gene Chr13:70473567-70538744 (+)
CAST/EiJ MGP_CASTEiJ_G0020035
 protein coding gene Chr13:74685975-74753108 (+)
CBA/J MGP_CBAJ_G0020476
 protein coding gene Chr13:81819609-81890355 (+)
DBA/2J MGP_DBA2J_G0020601
 protein coding gene Chr13:73363069-73429299 (+)
FVB/NJ MGP_FVBNJ_G0020581
 protein coding gene Chr13:72422565-72486894 (+)
LP/J MGP_LPJ_G0020674
 protein coding gene Chr13:76520912-76589198 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0020610
 protein coding gene Chr13:80207693-80277831 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0021200
 protein coding gene Chr13:75209257-75274173 (+)
PWK/PhJ MGP_PWKPhJ_G0019788
 protein coding gene Chr13:72255834-72322521 (+)
SPRET/EiJ MGP_SPRETEiJ_G0019611
 protein coding gene Chr13:71589163-71656220 (+)
WSB/EiJ MGP_WSBEiJ_G0020092
 protein coding gene Chr13:75709236-75774140 (+)



Homology
more
  • Human Ortholog
    ELL2, elongation factor for RNA polymerase II 2
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    ELL2, elongation factor for RNA polymerase II 2
  • Synonyms
    MRCCAT1
  • Links
    NCBI Gene ID: 22936
    neXtProt AC: NX_O00472
    UniProt: O00472

  • Chr Location
    5q15; chr5:95885098-95961851 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    21 phenotypes from 4 alleles in 3 genetic backgrounds
    22 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    11
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    823
  • Tissues
    112
  • cDNA Data
    69
  • Literature Summary
    3
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 192657 NCBI Gene Model | MGI Sequence Detail 64878 C57BL/6J ±  kb
    transcript NM_138953 RefSeq | MGI Sequence Detail 3660 C57BL/6  
    polypeptide Q3UKU1 UniProt | EBI | MGI Sequence Detail 639 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 69
      cDNA 69

      Microarray probesets 5
    References
    more
    • Summaries
      All 49
      Developmental Gene Expression 3
      Gene Ontology 4
      Phenotypes 22
    • Earliest
      J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory