BC016579 MGI Mouse Gene Detail - MGI:2384848

Symbol

BC016579
Name

cDNA sequence, BC016579
Synonyms

MGC:27720

Feature Type

protein coding gene
IDs

MGI:2384848
NCBI Gene: 212998
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr16:45447211-45474431 bp, - strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 16, 29.76 cM
Mapping Data

1 experiment

SNPs within 2kb

853 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2384848	protein coding gene	Chr16:45447211-45476215 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0022855	protein coding gene	Chr16:44409019-44436261 (-)
A/J	MGP_AJ_G0022820	protein coding gene	Chr16:42426163-42453343 (-)
AKR/J	MGP_AKRJ_G0022792	protein coding gene	Chr16:43817385-43844403 (-)
BALB/cJ	MGP_BALBcJ_G0022821	protein coding gene	Chr16:42447169-42475781 (-)
C3H/HeJ	MGP_C3HHeJ_G0022585	protein coding gene	Chr16:43981837-44009707 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0023268	protein coding gene	Chr16:45430002-45456982 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0020782	protein coding gene	Chr16:42781426-42808920 (-)
CAST/EiJ	MGP_CASTEiJ_G0022110	protein coding gene	Chr16:44172812-44201746 (-)
CBA/J	MGP_CBAJ_G0022556	protein coding gene	Chr16:47336595-47365627 (-)
DBA/2J	MGP_DBA2J_G0022688	protein coding gene	Chr16:42163471-42191365 (-)
FVB/NJ	MGP_FVBNJ_G0022664	protein coding gene	Chr16:42076022-42103243 (-)
LP/J	MGP_LPJ_G0022756	protein coding gene	Chr16:44145167-44172280 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0022682	protein coding gene	Chr16:46753772-46781651 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0023283	protein coding gene	Chr16:43831952-43860884 (-)
PWK/PhJ	MGP_PWKPhJ_G0021850	protein coding gene	Chr16:42531460-42560409 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0021681	protein coding gene	Chr16:43769280-43796312 (-)
WSB/EiJ	MGP_WSBEiJ_G0022155	protein coding gene	Chr16:43927268-43955170 (-)

Human Ortholog

C3orf52, chromosome 3 open reading frame 52

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

C3orf52, chromosome 3 open reading frame 52
Synonyms

HYPT15, TTMP
Links

HGNC:26255

NCBI Gene ID: 79669

neXtProt AC: NX_Q5BVD1

UniProt: Q5BVD1
Chr Location

3q13.2; chr3:112086335-112136381 (+) GRCh38

MGI Vertebrate Homology

BC016579 stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: C3orf52
Gene Tree

BC016579

Diseases

1 with human C3orf52 associations

				Human Disease	Mouse Models
				hypotrichosis 15 IDs hypotrichosis 15 DOID:0060968 OMIM:620177

Click on a disease name to see all genes associated with that disease.

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Phenotype Summary

1 phenotype reference

All Mutations and Alleles

1
Endonuclease-mediated

1
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

11 strains or lines available

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All GO Annotations

2
GO References

2

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

706
cDNA Data

7

Tissue x Stage Matrix

Other Mouse Links

Allen Institute

GEO

Expression Atlas

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All Sequences

37
RefSeq

10
UniProt

2
CCDS

CCDS49862.1

Ensembl

ENSMUSG00000033187 (Evidence)
NCBI Gene

212998

			Length	Strain/Species	Flank
genomic	ENSMUSG00000033187	Ensembl Gene Model \| MGI Sequence Detail	27221	C57BL/6J	± kb
transcript	ENSMUST00000036732	Ensembl \| MGI Sequence Detail	2142	Not Applicable
polypeptide	ENSMUSP00000037651	Ensembl \| MGI Sequence Detail	218	Not Applicable

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UniProt

2 Sequences
Protein Ontology

PR:000059812 TPA-induced transmembrane protein

(term hierarchy)
InterPro Domains

IPR033223 TPA-induced transmembrane protein

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All nucleic 7

cDNA 7

Microarray probesets 2

Summaries

All 18

Gene Ontology 2

Phenotypes 1
Earliest

J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for BC016579:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr141242	Chr16:45474446-45474459 (-)	-22 bp
Tssr141241	Chr16:45474413-45474424 (-)	12 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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