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BC005624 Gene Detail
Summary
  • Symbol
    BC005624
  • Name
    cDNA sequence BC005624
  • Synonyms
    MGC:11690
  • Feature Type
    protein coding gene
  • IDs
    MGI:2385132
    NCBI Gene: 227707
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr2:30862845-30872225 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 2, 21.77 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    267 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2385132
 protein coding gene Chr2:30862189-30872225 (-)
129S1/SvImJ MGP_129S1SvImJ_G0025579
 protein coding gene Chr2:29269430-29281217 (-)
A/J MGP_AJ_G0025557
 protein coding gene Chr2:28079318-28090020 (-)
AKR/J MGP_AKRJ_G0025526
 protein coding gene Chr2:29039828-29048766 (-)
BALB/cJ MGP_BALBcJ_G0025553
 protein coding gene Chr2:28214708-28225816 (-)
C3H/HeJ MGP_C3HHeJ_G0025314
 protein coding gene Chr2:28967730-28980305 (-)
C57BL/6NJ MGP_C57BL6NJ_G0025998
 protein coding gene Chr2:30216284-30226049 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0023406
 protein coding gene Chr2:26843570-26853787 (-)
CAST/EiJ MGP_CASTEiJ_G0024776
 protein coding gene Chr2:28903904-28913885 (-)
CBA/J MGP_CBAJ_G0025291
 protein coding gene Chr2:31290846-31304027 (-)
DBA/2J MGP_DBA2J_G0025424
 protein coding gene Chr2:27858342-27867500 (-)
FVB/NJ MGP_FVBNJ_G0025387
 protein coding gene Chr2:27697814-27709886 (-)
LP/J MGP_LPJ_G0025510
 protein coding gene Chr2:29176936-29188026 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0025417
 protein coding gene Chr2:31070268-31086907 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0026056
 protein coding gene Chr2:28948566-28961288 (-)
PWK/PhJ MGP_PWKPhJ_G0024523
 protein coding gene Chr2:27731152-27741808 (-)
SPRET/EiJ MGP_SPRETEiJ_G0024323
 protein coding gene Chr2:29093802-29103226 (-)
WSB/EiJ MGP_WSBEiJ_G0024844
 protein coding gene Chr2:29124856-29137057 (-)



Homology
more
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    C9orf78, chromosome 9 open reading frame 78
  • Synonyms
    bA409K20.3, CSU2, HCA59, HSPC220, TLS1
  • Links
    NCBI Gene ID: 51759
    neXtProt AC: NX_Q9NZ63
    UniProt: Q9NZ63

  • Chr Location
    9q34.11; chr9:129827290-129835863 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    17
  • GO References
    5
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    50
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 227707 NCBI Gene Model | MGI Sequence Detail 9381 C57BL/6J ±  kb
transcript NM_144885 RefSeq | MGI Sequence Detail 1302 C57BL/6  
polypeptide Q3TQI7 UniProt | EBI | MGI Sequence Detail 289 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 50
    cDNA 50

    Microarray probesets 4
References
more
  • Summaries
    All 27
    Gene Ontology 5
    Phenotypes 4
  • Earliest
    J:82808 Strausberg RL, et al., Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903
  • Latest
    J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory