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Gatd1 Gene Detail
Summary
  • Symbol
    Gatd1
  • Name
    glutamine amidotransferase like class 1 domain containing 1
  • Synonyms
    D230016J19Rik, MGC:38368, Pddc1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2387178
    NCBI Gene: 213350
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr7:140988097-140994038 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 7, 86.75 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    267 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2387178
 protein coding gene Chr7:140987707-140994049 (-)
129S1/SvImJ MGP_129S1SvImJ_G0033227
 protein coding gene Chr7:146595272-146601273 (-)
A/J MGP_AJ_G0033209
 protein coding gene Chr7:142401429-142407430 (-)
AKR/J MGP_AKRJ_G0033141
 protein coding gene Chr7:146337476-146343477 (-)
BALB/cJ MGP_BALBcJ_G0033210
 protein coding gene Chr7:142147521-142153522 (-)
C3H/HeJ MGP_C3HHeJ_G0032924
 protein coding gene Chr7:146092675-146098676 (-)
C57BL/6NJ MGP_C57BL6NJ_G0033721
 protein coding gene Chr7:151948537-151954538 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0030694
 protein coding gene Chr7:143614377-143620435 (-)
CAST/EiJ MGP_CASTEiJ_G0032254
 protein coding gene Chr7:138401739-138408393 (-)
CBA/J MGP_CBAJ_G0032896
 protein coding gene Chr7:157103061-157109062 (-)
DBA/2J MGP_DBA2J_G0033048
 protein coding gene Chr7:140349294-140355290 (-)
FVB/NJ MGP_FVBNJ_G0033001
 protein coding gene Chr7:140264336-140270337 (-)
LP/J MGP_LPJ_G0033143
 protein coding gene Chr7:148092336-148098337 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0033034
 protein coding gene Chr7:157741149-157749395 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0033741
 protein coding gene Chr7:145309383-145316729 (-)
PWK/PhJ MGP_PWKPhJ_G0031958
 protein coding gene Chr7:133631314-133637650 (-)
SPRET/EiJ MGP_SPRETEiJ_G0031805
 protein coding gene Chr7:132142316-132148289 (-)
WSB/EiJ MGP_WSBEiJ_G0032365
 protein coding gene Chr7:146258364-146264632 (-)



Homology
more
  • Human Ortholog
    GATD1, glutamine amidotransferase class 1 domain containing 1
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GATD1, glutamine amidotransferase class 1 domain containing 1
  • Synonyms
    FERRY5, Fy-5, PDDC1
  • Links
    NCBI Gene ID: 347862
    neXtProt AC: NX_Q8NB37
    UniProt: Q8NB37

  • Chr Location
    11p15.5; chr11:767220-777488 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    41
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 213350 NCBI Gene Model | MGI Sequence Detail 5942 C57BL/6J ±  kb
transcript NM_172116 RefSeq | MGI Sequence Detail 1497 C57BL/6  
polypeptide Q8BFQ8 UniProt | EBI | MGI Sequence Detail 220 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • Protein Ontology
    PR:000030579 glutamine amidotransferase-like class 1 domain-containing protein 1
    (term hierarchy)
  • InterPro Domains
    IPR029062 Class I glutamine amidotransferase-like
    IPR050325 Protein/nucleic acid deglycase
  • GlyGen
    Q8BFQ8 1 site, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 41
    cDNA 41

    Microarray probesets 3
Other
Accession IDs
less
MGI:2442661, MGI:5883609
References
more
  • Summaries
    All 29
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory