A930001C03Rik Gene Detail

Summary

• Symbol
  A930001C03Rik
• Name
  RIKEN cDNA A930001C03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2441838
  NCBI Gene: 319314
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr19:4489351-4498353 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 19, 4.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  293 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2441838	lncRNA gene	Chr19:4489031-4499001 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015375	unclassified non-coding RNA gene	Chr19:1311010-1320297 (+)
A/J	MGP_AJ_G0015349	unclassified non-coding RNA gene	Chr19:1243302-1252598 (+)
AKR/J	MGP_AKRJ_G0015313	unclassified non-coding RNA gene	Chr19:1282727-1292023 (+)
BALB/cJ	MGP_BALBcJ_G0015313	unclassified non-coding RNA gene	Chr19:1243678-1252945 (+)
C3H/HeJ	MGP_C3HHeJ_G0015137	unclassified non-coding RNA gene	Chr19:1287599-1296893 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015767	unclassified non-coding RNA gene	Chr19:1357323-1370809 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013508	unclassified non-coding RNA gene	Chr19:1182862-1192491 (+)
CAST/EiJ	MGP_CASTEiJ_G0014688	unclassified non-coding RNA gene	Chr19:1291977-1301446 (+)
CBA/J	MGP_CBAJ_G0015116	unclassified non-coding RNA gene	Chr19:1428623-1437912 (+)
DBA/2J	MGP_DBA2J_G0015211	unclassified non-coding RNA gene	Chr19:1203528-1214228 (+)
FVB/NJ	MGP_FVBNJ_G0015218	unclassified non-coding RNA gene	Chr19:1231440-1240743 (+)
LP/J	MGP_LPJ_G0015291	unclassified non-coding RNA gene	Chr19:1319901-1329189 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015244	unclassified non-coding RNA gene	Chr19:1348271-1357553 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015806	unclassified non-coding RNA gene	Chr19:1285673-1294984 (+)
PWK/PhJ	MGP_PWKPhJ_G0014478	unclassified non-coding RNA gene	Chr19:1264617-1274028 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014265	unclassified non-coding RNA gene	Chr19:1269639-1278942 (+)
WSB/EiJ	MGP_WSBEiJ_G0014795	unclassified non-coding RNA gene	Chr19:1276517-1287185 (+)

Homology

• Gene Tree
  A930001C03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Gene trapped
  3
• Find Mice (IMSR)
  3 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  2

• Ensembl
  ENSMUSG00000087132 (Evidence)
• NCBI Gene
  319314

Representative Sequences			Length	Strain/Species
genomic	319314	NCBI Gene Model | MGI Sequence Detail	9003	C57BL/6J
transcript	NR_045989	RefSeq | MGI Sequence Detail	1126	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 10

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for A930001C03Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr154318	Chr19:4489539-4489567 (+)	202 bp