A430057M04Rik Gene Detail

Summary

• Symbol
  A430057M04Rik
• Name
  RIKEN cDNA A430057M04 gene

• Feature Type
  protein coding gene
  BioType Conflict
  
• IDs
  MGI:2442125
  NCBI Gene: 319486
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:21897646-21906994 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 11.92 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  409 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442125	protein coding gene	Chr14:21897646-21906999 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015267	unclassified non-coding RNA gene	Chr14:14697882-14707286 (+)
A/J	MGP_AJ_G0015241	unclassified non-coding RNA gene	Chr14:14309531-14318879 (+)
AKR/J	MGP_AKRJ_G0015204	unclassified non-coding RNA gene	Chr14:14879031-14888379 (+)
BALB/cJ	MGP_BALBcJ_G0015205	unclassified non-coding RNA gene	Chr14:14415517-14424923 (+)
C3H/HeJ	MGP_C3HHeJ_G0015029	unclassified non-coding RNA gene	Chr14:14798782-14808130 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015660	unclassified non-coding RNA gene	Chr14:15175504-15184852 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013402	unclassified non-coding RNA gene	Chr14:14626636-14635942 (+)
CAST/EiJ	MGP_CASTEiJ_G0014580	unclassified non-coding RNA gene	Chr14:14613507-14622978 (+)
CBA/J	MGP_CBAJ_G0015009	unclassified non-coding RNA gene	Chr14:15960058-15969462 (+)
DBA/2J	MGP_DBA2J_G0015102	unclassified non-coding RNA gene	Chr14:14142366-14151779 (+)
FVB/NJ	MGP_FVBNJ_G0015110	unclassified non-coding RNA gene	Chr14:14029779-14039183 (+)
LP/J	MGP_LPJ_G0015183	unclassified non-coding RNA gene	Chr14:14905402-14914858 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015137	unclassified non-coding RNA gene	Chr14:15702877-15712280 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015699	unclassified non-coding RNA gene	Chr14:14656510-14665916 (+)
PWK/PhJ	MGP_PWKPhJ_G0014372	unclassified non-coding RNA gene	Chr14:13731423-13740912 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014159	unclassified non-coding RNA gene	Chr14:14470989-14480406 (+)
WSB/EiJ	MGP_WSBEiJ_G0014687	unclassified non-coding RNA gene	Chr14:14655865-14665224 (+)

Homology

• Gene Tree
  A430057M04Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000090564 (Evidence)
• NCBI Gene
  319486

Representative Sequences			Length	Strain/Species
genomic	319486	NCBI Gene Model | MGI Sequence Detail	9349	C57BL/6J
transcript	NM_176925	RefSeq | MGI Sequence Detail	4699	C57BL/6
polypeptide	NP_795899	RefSeq | MGI Sequence Detail	158	C57BL/6

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 1

References

• Summaries
  All 12
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A430057M04Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr124459	Chr14:21898512-21898524 (+)	872 bp
Tssr124460	Chr14:21898534-21898555 (+)	899 bp
Tssr124461	Chr14:21898578-21898613 (+)	950 bp