B230208B08Rik Gene Detail

Summary

• Symbol
  B230208B08Rik
• Name
  RIKEN cDNA B230208B08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442149
  NCBI Gene: 102634132
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:78130261-78133841 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 37.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  10

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442149	lncRNA gene	Chr4:78130192-78133846 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015552	unclassified non-coding RNA gene	Chr4:77646715-77648950 (+)
A/J	MGP_AJ_G0015529	unclassified non-coding RNA gene	Chr4:74984749-74986984 (+)
AKR/J	MGP_AKRJ_G0015493	unclassified non-coding RNA gene	Chr4:76852461-76854683 (+)
BALB/cJ	MGP_BALBcJ_G0015491	unclassified non-coding RNA gene	Chr4:75132002-75134237 (+)
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	MGP_CAROLIEiJ_G0013680	unclassified non-coding RNA gene	Chr4:71215859-71218070 (+)
CAST/EiJ	MGP_CASTEiJ_G0014868	unclassified non-coding RNA gene	Chr4:75466615-75468870 (+)
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0015468	unclassified non-coding RNA gene	Chr4:78022996-78025231 (+)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0015986	unclassified non-coding RNA gene	Chr4:76985935-76988157 (+)
PWK/PhJ	no annotation
SPRET/EiJ	MGP_SPRETEiJ_G0014442	unclassified non-coding RNA gene	Chr4:74481213-74483437 (+)
WSB/EiJ	no annotation

Homology

• Gene Tree
  B230208B08Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving B230208B08Rik
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  19
• RefSeq
  1

• Ensembl
  ENSMUSG00000092492 (Evidence)
• NCBI Gene
  102634132

Representative Sequences			Length	Strain/Species
genomic	102634132	NCBI Gene Model | MGI Sequence Detail	3581	C57BL/6J
transcript	NR_190163	RefSeq | MGI Sequence Detail	1762	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 1

References

• Summaries
  All 11

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B230208B08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37650	Chr4:78130251-78130286 (+)	8 bp