A330041J22Rik Gene Detail

Summary

• Symbol
  A330041J22Rik
• Name
  RIKEN cDNA A330041J22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442269
  NCBI Gene: 319556
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:86577513-86583306 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 46.58 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  204 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442269	lncRNA gene	Chr9:86577495-86583306 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004657	antisense lncRNA gene	Chr9:87541489-87547272 (+)
A/J	MGP_AJ_G0004638	antisense lncRNA gene	Chr9:84483590-84489372 (+)
AKR/J	MGP_AKRJ_G0004621	antisense lncRNA gene	Chr9:86492764-86498531 (+)
BALB/cJ	MGP_BALBcJ_G0004622	antisense lncRNA gene	Chr9:84126761-84132543 (+)
C3H/HeJ	MGP_C3HHeJ_G0004571	antisense lncRNA gene	Chr9:86952278-86958060 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004772	antisense lncRNA gene	Chr9:89903692-89909480 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0004527	antisense lncRNA gene	Chr9:87417819-87423566 (+)
CBA/J	MGP_CBAJ_G0004565	antisense lncRNA gene	Chr9:93069829-93075622 (+)
DBA/2J	MGP_DBA2J_G0004580	antisense lncRNA gene	Chr9:84042247-84048003 (+)
FVB/NJ	MGP_FVBNJ_G0004598	antisense lncRNA gene	Chr9:83126625-83132872 (+)
LP/J	MGP_LPJ_G0004661	antisense lncRNA gene	Chr9:87752800-87758585 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004586	antisense lncRNA gene	Chr9:94682108-94687875 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004771	antisense lncRNA gene	Chr9:86597580-86603340 (+)
PWK/PhJ	MGP_PWKPhJ_G0004481	antisense lncRNA gene	Chr9:84209187-84214972 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0004570	antisense lncRNA gene	Chr9:86633831-86639603 (+)

Homology

• Gene Tree
  A330041J22Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Targeted
  1
• Genomic Mutations
  1 involving A330041J22Rik
• Find Mice (IMSR)
  2 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000087466 (Evidence)
• NCBI Gene
  319556

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000087466	Ensembl Gene Model | MGI Sequence Detail	5794	C57BL/6J
transcript	ENSMUST00000150367	Ensembl | MGI Sequence Detail	1825	Not Applicable
polypeptide	Q8CA76	UniProt | EBI | MGI Sequence Detail	107	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 1

References

• Summaries
  All 13

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582