C430002N11Rik Gene Detail

Summary

• Symbol
  C430002N11Rik
• Name
  RIKEN cDNA C430002N11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442576
  NCBI Gene: 319707
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:96647615-96656450 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 50.71 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  534 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442576	lncRNA gene	Chr9:96647615-96664530 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015754	unclassified non-coding RNA gene	Chr9:97982835-98005067 (+)
A/J	MGP_AJ_G0015731	unclassified non-coding RNA gene	Chr9:94554116-94571914 (+)
AKR/J	MGP_AKRJ_G0015694	unclassified non-coding RNA gene	Chr9:96861364-96878317 (+)
BALB/cJ	MGP_BALBcJ_G0015692	unclassified non-coding RNA gene	Chr9:94236710-94253509 (+)
C3H/HeJ	MGP_C3HHeJ_G0015513	unclassified non-coding RNA gene	Chr9:97263225-97281482 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016147	unclassified non-coding RNA gene	Chr9:100800035-100818047 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013872	unclassified non-coding RNA gene	Chr9:92387139-92403966 (+)
CAST/EiJ	MGP_CASTEiJ_G0015068	unclassified non-coding RNA gene	Chr9:97047354-97072281 (+)
CBA/J	MGP_CBAJ_G0015493	unclassified non-coding RNA gene	Chr9:104285081-104308467 (+)
DBA/2J	MGP_DBA2J_G0015592	unclassified non-coding RNA gene	Chr9:94074780-94091599 (+)
FVB/NJ	MGP_FVBNJ_G0015597	unclassified non-coding RNA gene	Chr9:92922429-92940759 (+)
LP/J	MGP_LPJ_G0015672	unclassified non-coding RNA gene	Chr9:98241032-98259225 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015620	unclassified non-coding RNA gene	Chr9:106269228-106287662 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016190	unclassified non-coding RNA gene	Chr9:97100662-97119477 (+)
PWK/PhJ	MGP_PWKPhJ_G0014851	unclassified non-coding RNA gene	Chr9:94256866-94274841 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014638	unclassified non-coding RNA gene	Chr9:97150680-97167547 (+)
WSB/EiJ	MGP_WSBEiJ_G0015172	unclassified non-coding RNA gene	Chr9:96961468-96979096 (+)

Homology

• Gene Tree
  C430002N11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving C430002N11Rik
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  4

• Ensembl
  ENSMUSG00000101581 (Evidence)
• NCBI Gene
  319707

Representative Sequences			Length	Strain/Species
genomic	319707	NCBI Gene Model | MGI Sequence Detail	8836	C57BL/6J
transcript	NR_102296	RefSeq | MGI Sequence Detail	1681	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 1

References

• Summaries
  All 12

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for C430002N11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr86616	Chr9:96647625-96647633 (+)	14 bp
Tssr86617	Chr9:96648864-96648889 (+)	1,262 bp