6330549D23Rik Pseudogene Detail

Summary

• Symbol
  6330549D23Rik
• Name
  RIKEN cDNA 6330549D23 gene

• Feature Type
  pseudogene
• IDs
  MGI:2442586
  NCBI Gene: 229613
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:96514940-96516041 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.93 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  122 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442586	pseudogene	Chr3:96513978-96537135 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0039706	pseudogene	Chr3:97489883-97515017 (-)
A/J	MGP_AJ_G0039704	pseudogene	Chr3:94371597-94396312 (-)
AKR/J	MGP_AKRJ_G0039630	pseudogene	Chr3:96592863-96620712 (-)
BALB/cJ	MGP_BALBcJ_G0039674	pseudogene	Chr3:94181514-94206190 (-)
C3H/HeJ	MGP_C3HHeJ_G0039336	pseudogene	Chr3:96903048-96928463 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040235	pseudogene	Chr3:101044433-101073443 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0038456	pseudogene	Chr3:96152732-96181701 (-)
CBA/J	MGP_CBAJ_G0039307	pseudogene	Chr3:104741080-104769087 (-)
DBA/2J	MGP_DBA2J_G0039501	pseudogene	Chr3:93702677-93726602 (-)
FVB/NJ	MGP_FVBNJ_G0039459	pseudogene	Chr3:91712941-91737254 (-)
LP/J	MGP_LPJ_G0039540	pseudogene	Chr3:98774869-98800077 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0039461	pseudogene	Chr3:110810435-110864263 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0040336	pseudogene	Chr3:96210889-96238215 (-)
PWK/PhJ	MGP_PWKPhJ_G0038132	pseudogene	Chr3:93537341-93561236 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0037881	pseudogene	Chr3:94513313-94537086 (-)
WSB/EiJ	MGP_WSBEiJ_G0038690	pseudogene	Chr3:96659756-96683819 (-)

Homology

• Gene Tree
  6330549D23Rik
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  5
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Targeted
  2
• Genomic Mutations
  2 involving 6330549D23Rik
• Find Mice (IMSR)
  5 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000045327 (Evidence)
• NCBI Gene
  229613

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000045327	Ensembl Gene Model | MGI Sequence Detail	1102	C57BL/6J
transcript	ENSMUST00000159536	Ensembl | MGI Sequence Detail	1102	Not Applicable
polypeptide	Q8CCV6	UniProt | EBI | MGI Sequence Detail	187	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR039841 Integrator complex subunit 14
  IPR045814 Integrator complex subunit 14, beta-barrel domain

Molecular
Reagents

• All nucleic 6

  cDNA 6

  
  

  Microarray probesets 2

References

• Summaries
  All 19

  Diseases 1

  Phenotypes 8
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426