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Slc36a4 Gene Detail
Summary
  • Symbol
    Slc36a4
  • Name
    solute carrier family 36 (proton/amino acid symporter), member 4
  • Synonyms
    6330573I15Rik, PAT4
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442595
    NCBI Gene: 234967
  • Alliance
    gene page
  • Transcription Start Sites
    6 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:15621034-15653684 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 5.12 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1178 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442595
 protein coding gene Chr9:15621034-15654657 (+)
129S1/SvImJ MGP_129S1SvImJ_G0034368
 protein coding gene Chr9:12710358-12740124 (+)
A/J MGP_AJ_G0034346
 protein coding gene Chr9:12627275-12659467 (+)
AKR/J MGP_AKRJ_G0034274
 protein coding gene Chr9:12667112-12699262 (+)
BALB/cJ MGP_BALBcJ_G0034340
 protein coding gene Chr9:12410152-12442188 (+)
C3H/HeJ MGP_C3HHeJ_G0034051
 protein coding gene Chr9:12981690-13013882 (+)
C57BL/6NJ MGP_C57BL6NJ_G0034862
 protein coding gene Chr9:13123609-13153579 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0031800
 protein coding gene Chr9:11890218-11923298 (+)
CAST/EiJ MGP_CASTEiJ_G0033378
 protein coding gene Chr9:12833627-12871841 (+)
CBA/J MGP_CBAJ_G0034024
 protein coding gene Chr9:13744789-13778523 (+)
DBA/2J MGP_DBA2J_G0034181
 protein coding gene Chr9:12494960-12527152 (+)
FVB/NJ MGP_FVBNJ_G0034126
 protein coding gene Chr9:12077744-12109785 (+)
LP/J MGP_LPJ_G0034267
 protein coding gene Chr9:12817263-12850739 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0034170
 protein coding gene Chr9:14747296-14777525 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0034881
 protein coding gene Chr9:12705790-12734953 (+)
PWK/PhJ MGP_PWKPhJ_G0033084
 protein coding gene Chr9:12576805-12635957 (+)
SPRET/EiJ MGP_SPRETEiJ_G0032919
 protein coding gene Chr9:12813219-12850995 (+)
WSB/EiJ MGP_WSBEiJ_G0033494
 protein coding gene Chr9:12535339-12569018 (+)



Homology
more
  • Human Ortholog
    SLC36A4, solute carrier family 36 member 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SLC36A4, solute carrier family 36 member 4
  • Synonyms
    PAT4
  • Links
    NCBI Gene ID: 120103
    neXtProt AC: NX_Q6YBV0
    UniProt: Q6YBV0

  • Chr Location
    11q21; chr11:93144174-93197991 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    16
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    707
  • Tissues
    1
  • cDNA Data
    30
  • Literature Summary
    2
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 234967 NCBI Gene Model | MGI Sequence Detail 32651 C57BL/6J ±  kb
transcript NM_172289 RefSeq | MGI Sequence Detail 5567 C57BL/6  
polypeptide Q8CH36 UniProt | EBI | MGI Sequence Detail 500 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    4 Sequences
  • Protein Ontology
    PR:000015113 neutral amino acid uniporter 4
    (term hierarchy)
  • InterPro Domains
    IPR013057 Amino acid transporter, transmembrane domain
  • GlyGen
    Q8CH36 2 sites, 1 N-linked glycan (1 site)
Molecular
Reagents
less
  • All nucleic 33
    cDNA 30
    Primer pair 2
    Other 1

    Microarray probesets 1
References
more
  • Summaries
    All 29
    Developmental Gene Expression 2
    Gene Ontology 6
    Phenotypes 5
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory