A330035P11Rik Gene Detail

Summary

• Symbol
  A330035P11Rik
• Name
  RIKEN cDNA A330035P11 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442610
  NCBI Gene: 319727
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:122337385-122344395 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 65.86 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  265 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442610	lncRNA gene	Chr14:122335351-122344395 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015286	unclassified non-coding RNA gene	Chr14:119987105-119991872 (-)
A/J	MGP_AJ_G0015260	unclassified non-coding RNA gene	Chr14:115333211-115336752 (-)
AKR/J	MGP_AKRJ_G0015223	unclassified non-coding RNA gene	Chr14:119070026-119073567 (-)
BALB/cJ	MGP_BALBcJ_G0015224	unclassified non-coding RNA gene	Chr14:115878760-115882291 (-)
C3H/HeJ	MGP_C3HHeJ_G0015048	unclassified non-coding RNA gene	Chr14:118952461-118957906 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015679	unclassified non-coding RNA gene	Chr14:124595272-124600584 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013420	unclassified non-coding RNA gene	Chr14:111197022-111200806 (-)
CAST/EiJ	MGP_CASTEiJ_G0014599	unclassified non-coding RNA gene	Chr14:116869696-116873177 (-)
CBA/J	MGP_CBAJ_G0015028	unclassified non-coding RNA gene	Chr14:129332028-129335539 (-)
DBA/2J	MGP_DBA2J_G0015122	unclassified non-coding RNA gene	Chr14:115194185-115197924 (-)
FVB/NJ	MGP_FVBNJ_G0015129	unclassified non-coding RNA gene	Chr14:113547980-113552327 (-)
LP/J	MGP_LPJ_G0015202	unclassified non-coding RNA gene	Chr14:120903270-120906796 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015155	unclassified non-coding RNA gene	Chr14:134329847-134334820 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015718	unclassified non-coding RNA gene	Chr14:118642791-118646324 (-)
PWK/PhJ	MGP_PWKPhJ_G0014391	unclassified non-coding RNA gene	Chr14:112252370-112255953 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014178	unclassified non-coding RNA gene	Chr14:114842711-114846240 (-)
WSB/EiJ	MGP_WSBEiJ_G0014706	unclassified non-coding RNA gene	Chr14:119325469-119330011 (-)

Homology

• Gene Tree
  A330035P11Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Gene trapped
  2
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  1

• Ensembl
  ENSMUSG00000085615 (Evidence)
• NCBI Gene
  319727

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085615	Ensembl Gene Model | MGI Sequence Detail	7011	C57BL/6J
transcript	ENSMUST00000144926	Ensembl | MGI Sequence Detail	3104	Not Applicable

Molecular
Reagents

• All nucleic 10

  cDNA 10

References

• Summaries
  All 12

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A330035P11Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr130318	Chr14:122344352-122344401 (-)	18 bp
Tssr130317	Chr14:122344328-122344339 (-)	61 bp
Tssr130316	Chr14:122343246-122343253 (-)	1,145 bp