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Pcdh11x Gene Detail
Summary
  • Symbol
    Pcdh11x
  • Name
    protocadherin 11 X-linked
  • Synonyms
    A230092L07Rik, PCDHX
  • Feature Type
    protein coding gene
  • IDs
    MGI:2442849
    NCBI Gene: 245578
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:119199956-119820316 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 49.58 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    12235 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2442849
 protein coding gene ChrX:119199954-119820319 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036045
 protein coding gene ChrX:117167282-117815770 (+)
A/J MGP_AJ_G0036026
 protein coding gene ChrX:116777263-117413745 (+)
AKR/J MGP_AKRJ_G0035944
 protein coding gene ChrX:120589330-121216664 (+)
BALB/cJ MGP_BALBcJ_G0036018
 protein coding gene ChrX:115248367-115900284 (+)
C3H/HeJ MGP_C3HHeJ_G0035724
 protein coding gene ChrX:117430021-118088874 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036542
 protein coding gene ChrX:120671809-121353175 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033368
 protein coding gene ChrX:112941455-113502210 (+)
CAST/EiJ MGP_CASTEiJ_G0035011
 protein coding gene ChrX:101186660-101809660 (+)
CBA/J MGP_CBAJ_G0035699
 protein coding gene ChrX:124449421-125159366 (+)
DBA/2J MGP_DBA2J_G0035850
 protein coding gene ChrX:116117161-116765594 (+)
FVB/NJ MGP_FVBNJ_G0035794
 protein coding gene ChrX:115430396-116083458 (+)
LP/J MGP_LPJ_G0035944
 protein coding gene ChrX:118041474-118699055 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035823
 protein coding gene ChrX:130567158-131324832 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036569
 protein coding gene ChrX:116680841-117328165 (+)
PWK/PhJ MGP_PWKPhJ_G0034703
 protein coding gene ChrX:98483330-99125664 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034534
 protein coding gene ChrX:101897080-102538960 (+)
WSB/EiJ MGP_WSBEiJ_G0035147
 protein coding gene ChrX:115308154-115954546 (+)



Homology
more
  • Human Ortholog
    PCDH11X, protocadherin 11 X-linked
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PCDH11X, protocadherin 11 X-linked
  • Synonyms
    PCDH11, PCDH11Y, PCDH22, PCDH-X, PCDHX, PCDH-Y, PPP1R119
  • Links
    NCBI Gene ID: 27328
    neXtProt AC: NX_Q9BZA7
    UniProt: Q9BZA7

  • Chr Location
    Xq21.31; chrX:91779261-92623230 (+)  GRCh38
  • Human Ortholog
    PCDH11Y, protocadherin 11 Y-linked
  • Synonyms
    PCDH22, PCDH-PC, PCDHX, PCDHY
  • Links
    NCBI Gene ID: 83259
    neXtProt AC: NX_Q9BZA8
    UniProt: Q9BZA8

  • Chr Location
    Yp11.2; chrY:5000226-5742228 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    4 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    5
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    951
  • Tissues
    47
  • cDNA Data
    9
  • Literature Summary
    13
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000034755 Ensembl Gene Model | MGI Sequence Detail 620361 C57BL/6J ±  kb
transcript ENSMUST00000113364 Ensembl | MGI Sequence Detail 4454 Not Applicable  
polypeptide ENSMUSP00000108991 Ensembl | MGI Sequence Detail 1338 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 11
    cDNA 9
    Primer pair 2

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Developmental Gene Expression 13
    Gene Ontology 3
    Phenotypes 4
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:357284 Lo Giudice Q, et al., Developmental emergence of first- and higher-order thalamic neuron molecular identities. Development. 2024 Sep 15;151(18)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory