A630012P03Rik Gene Detail

Summary

• Symbol
  A630012P03Rik
• Name
  RIKEN cDNA A630012P03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442968
  NCBI Gene: 100504594
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:51664720-51707924 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 29.02 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  716 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442968	lncRNA gene	ChrX:51664720-51707924 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004724	antisense lncRNA gene	ChrX:47786171-47831000 (+)
A/J	MGP_AJ_G0004702	antisense lncRNA gene	ChrX:47644001-47687130 (+)
AKR/J	MGP_AKRJ_G0004685	antisense lncRNA gene	ChrX:48941379-48985560 (+)
BALB/cJ	MGP_BALBcJ_G0004686	antisense lncRNA gene	ChrX:47179089-47226218 (+)
C3H/HeJ	MGP_C3HHeJ_G0004634	antisense lncRNA gene	ChrX:48037259-48081437 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004835	antisense lncRNA gene	ChrX:48913307-48957123 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004276	antisense lncRNA gene	ChrX:45099157-45142353 (+)
CAST/EiJ	MGP_CASTEiJ_G0004591	antisense lncRNA gene	ChrX:35483428-35526366 (+)
CBA/J	MGP_CBAJ_G0004629	antisense lncRNA gene	ChrX:50275959-50320163 (+)
DBA/2J	MGP_DBA2J_G0004644	antisense lncRNA gene	ChrX:47430294-47473296 (+)
FVB/NJ	MGP_FVBNJ_G0004662	antisense lncRNA gene	ChrX:47148223-47191166 (+)
LP/J	MGP_LPJ_G0004726	antisense lncRNA gene	ChrX:48109421-48154272 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004648	antisense lncRNA gene	ChrX:51820658-51864681 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004835	antisense lncRNA gene	ChrX:47666495-47712295 (+)
PWK/PhJ	MGP_PWKPhJ_G0004543	antisense lncRNA gene	ChrX:34971757-35015572 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004480	antisense lncRNA gene	ChrX:36274064-36317877 (+)
WSB/EiJ	MGP_WSBEiJ_G0004634	antisense lncRNA gene	ChrX:47227446-47271310 (+)

Homology

• Gene Tree
  A630012P03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  717
• Tissues
  2
• cDNA Data
  10
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055110 (Evidence)
• NCBI Gene
  100504594

Representative Sequences			Length	Strain/Species
genomic	100504594	NCBI Gene Model | MGI Sequence Detail	43205	C57BL/6J
transcript	NR_045367	RefSeq | MGI Sequence Detail	1972	C57BL/6
polypeptide	Q8C9S7	UniProt | EBI | MGI Sequence Detail	216	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42