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Fam78b Gene Detail
Summary
  • Symbol
    Fam78b
  • Name
    family with sequence similarity 78, member B
  • Synonyms
    C030014K22Rik, C030020L09Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443050
    NCBI Gene: 226610
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr1:166828986-166918871 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 1, 74.38 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2525 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443050
 protein coding gene Chr1:166827456-166918871 (+)
129S1/SvImJ MGP_129S1SvImJ_G0016709
 protein coding gene Chr1:172540208-172634375 (+)
A/J MGP_AJ_G0016690
 protein coding gene Chr1:165503125-165599781 (+)
AKR/J MGP_AKRJ_G0016656
 protein coding gene Chr1:170517015-170608020 (+)
BALB/cJ MGP_BALBcJ_G0016651
 protein coding gene Chr1:165987196-166077577 (+)
C3H/HeJ MGP_C3HHeJ_G0016475
 protein coding gene Chr1:170736223-170831368 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017112
 protein coding gene Chr1:178317600-178416481 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0014821
 protein coding gene Chr1:157360827-157450186 (+)
CAST/EiJ MGP_CASTEiJ_G0016055
 protein coding gene Chr1:170327536-170428597 (+)
CBA/J MGP_CBAJ_G0016450
 protein coding gene Chr1:184648127-184748985 (+)
DBA/2J MGP_DBA2J_G0016556
 protein coding gene Chr1:164359220-164449826 (+)
FVB/NJ MGP_FVBNJ_G0016554
 protein coding gene Chr1:162800656-162891096 (+)
LP/J MGP_LPJ_G0016627
 protein coding gene Chr1:173609280-173707493 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0016579
 protein coding gene Chr1:192051686-192149262 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017148
 protein coding gene Chr1:170375236-170469383 (+)
PWK/PhJ MGP_PWKPhJ_G0015841
 protein coding gene Chr1:163556638-163651262 (+)
SPRET/EiJ MGP_SPRETEiJ_G0015627
 protein coding gene Chr1:169138895-169242871 (+)
WSB/EiJ MGP_WSBEiJ_G0016117
 protein coding gene Chr1:170474491-170566715 (+)



Homology
more
  • Human Ortholog
    FAM78B, family with sequence similarity 78 member B
  • Vertebrate Orthologs
    4
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM78B, family with sequence similarity 78 member B
  • Links
    NCBI Gene ID: 149297
    neXtProt AC: NX_Q5VT40
    UniProt: Q5VT40

  • Chr Location
    1q24.1; chr1:166055918-166167001 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
  • All Mutations and Alleles
    3
  • Chemically induced (other)
    2
  • Endonuclease-mediated
    1
  • Genomic Mutations
    2 involving Fam78b
  • Find Mice (IMSR)
    21 strains or lines available
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    27
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000060568 Ensembl Gene Model | MGI Sequence Detail 89886 C57BL/6J ±  kb
transcript ENSMUST00000165874 Ensembl | MGI Sequence Detail 4986 Not Applicable  
polypeptide ENSMUSP00000131620 Ensembl | MGI Sequence Detail 261 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 27
    cDNA 27

    Microarray probesets 3
Other
Accession IDs
less
MGI:1924716
References
more
  • Summaries
    All 21
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:99680 The FANTOM Consortium and RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group), The Transcriptional Landscape of the Mammalian Genome. Science. 2005;309(5740):1559-1563
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory