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Cpne9 Gene Detail
Summary
  • Symbol
    Cpne9
  • Name
    copine family member IX
  • Synonyms
    A730016F12Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443052
    NCBI Gene: 211232
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    Chr6:113259244-113282532 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, 52.75 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    600 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443052
 protein coding gene Chr6:113259244-113282588 (+)
129S1/SvImJ MGP_129S1SvImJ_G0031115
 protein coding gene Chr6:115786639-115809934 (+)
A/J MGP_AJ_G0031084
 protein coding gene Chr6:111354460-111377605 (+)
AKR/J MGP_AKRJ_G0031015
 protein coding gene Chr6:114346904-114370033 (+)
BALB/cJ MGP_BALBcJ_G0031095
 protein coding gene Chr6:111303946-111327238 (+)
C3H/HeJ MGP_C3HHeJ_G0030613
 protein coding gene Chr6:69924372-69947562 (-)
C57BL/6NJ MGP_C57BL6NJ_G0031554
 protein coding gene Chr6:118789294-118812598 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0028718
 protein coding gene Chr6:108361259-108386058 (+)
CAST/EiJ MGP_CASTEiJ_G0030202
 protein coding gene Chr6:114779524-114802866 (+)
CBA/J MGP_CBAJ_G0030781
 protein coding gene Chr6:123485346-123511583 (+)
DBA/2J MGP_DBA2J_G0030934
 protein coding gene Chr6:110438209-110461535 (+)
FVB/NJ MGP_FVBNJ_G0030888
 protein coding gene Chr6:109436376-109460695 (+)
LP/J MGP_LPJ_G0031014
 protein coding gene Chr6:115834723-115858042 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0030922
 protein coding gene Chr6:127751669-127774791 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0031581
 protein coding gene Chr6:114361549-114384844 (+)
PWK/PhJ MGP_PWKPhJ_G0029918
 protein coding gene Chr6:109387725-109411155 (+)
SPRET/EiJ MGP_SPRETEiJ_G0029746
 protein coding gene Chr6:113179413-113202502 (+)
WSB/EiJ MGP_WSBEiJ_G0030286
 protein coding gene Chr6:114731546-114757250 (+)



Homology
more
  • Human Ortholog
    CPNE9, copine family member 9
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CPNE9, copine family member 9
  • Links
    NCBI Gene ID: 151835
    neXtProt AC: NX_Q8IYJ1
    UniProt: Q8IYJ1

  • Chr Location
    3p25.3; chr3:9703826-9729908 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    7
  • GO References
    4
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    12
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 211232 NCBI Gene Model | MGI Sequence Detail 23289 C57BL/6J ±  kb
transcript NM_170673 RefSeq | MGI Sequence Detail 2779 C57BL/6  
polypeptide Q1RLL3 UniProt | EBI | MGI Sequence Detail 553 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 12
    cDNA 12

    Microarray probesets 2
References
more
  • Summaries
    All 30
    Gene Ontology 4
    Phenotypes 9
  • Earliest
    J:86882 Creutz CE, et al., The copines, a novel class of C2 domain-containing, calcium-dependent, phospholipid-binding proteins conserved from Paramecium to humans. J Biol Chem. 1998 Jan 16;273(3):1393-402
  • Latest
    J:330636 Iwata S, et al., An efficient i-GONAD method for creating and maintaining lethal mutant mice using an inversion balancer identified from the C3H/HeJJcl strain. G3 (Bethesda). 2021;11(8)
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory