A530079E22Rik Gene Detail

Summary

• Symbol
  A530079E22Rik
• Name
  RIKEN cDNA A530079E22 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443097
  NCBI Gene: 319977
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:87432980-87434648 bp, - strand

  From MGI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 44.44 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  85 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443097	lncRNA gene	Chr1:87432980-87434648 (-)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Gene Ontology
(GO)
Classifications

Expression

• cDNA Data
  4

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  6
• UniProt
  1

• NCBI Gene
  319977

Representative Sequences			Length	Strain/Species
transcript	AK080193	GenBank | ENA | DDBJ | MGI Sequence Detail	1664	C57BL/6J
polypeptide	Q8BH81	UniProt | EBI | MGI Sequence Detail	105	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 2

References

• Summaries
  All 10
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582