About   Help   FAQ
C530044C16Rik Gene Detail
Summary
  • Symbol
    C530044C16Rik
  • Name
    RIKEN cDNA C530044C16 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443109
    NCBI Gene: 319981
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    Chr6:50753095-50791874 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 6, Syntenic
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    529 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443109
 lncRNA gene Chr6:50753095-50792013 (+)
129S1/SvImJ MGP_129S1SvImJ_G0006954
 lincRNA gene Chr6:49907185-49947198 (+)
A/J MGP_AJ_G0006949
 lincRNA gene Chr6:47592923-47632524 (+)
AKR/J MGP_AKRJ_G0006919
 lincRNA gene Chr6:49248851-49287770 (+)
BALB/cJ MGP_BALBcJ_G0006926
 lincRNA gene Chr6:47931858-47971061 (+)
C3H/HeJ MGP_C3HHeJ_G0006870
 lincRNA gene Chr6:49284203-49325243 (+)
C57BL/6NJ MGP_C57BL6NJ_G0007088
 lincRNA gene Chr6:51026840-51066573 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0006335
 lincRNA gene Chr6:45257664-45297299 (+)
CAST/EiJ MGP_CASTEiJ_G0006786
 lincRNA gene Chr6:49013350-49052291 (+)
CBA/J MGP_CBAJ_G0006852
 lincRNA gene Chr6:53164795-53210730 (+)
DBA/2J MGP_DBA2J_G0006872
 lincRNA gene Chr6:47519715-47558888 (+)
FVB/NJ MGP_FVBNJ_G0006895
 lincRNA gene Chr6:47139302-47179098 (+)
LP/J MGP_LPJ_G0006954
 lincRNA gene Chr6:49883765-49923756 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0006875
 lincRNA gene Chr6:55866869-55907130 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0007092
 lincRNA gene Chr6:49165491-49208430 (+)
PWK/PhJ MGP_PWKPhJ_G0006726
 lincRNA gene Chr6:47098058-47137850 (+)
SPRET/EiJ MGP_SPRETEiJ_G0006636
 lincRNA gene Chr6:48496534-48535386 (+)
WSB/EiJ MGP_WSBEiJ_G0006841
 lincRNA gene Chr6:49145662-49184526 (+)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
  • All Sequences
    26
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 319981 NCBI Gene Model | MGI Sequence Detail 38780 C57BL/6J ±  kb
transcript NR_045984 RefSeq | MGI Sequence Detail 1239 ZRU/MplStud  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 1
References
more
  • Summaries
    All 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory