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5930430L01Rik Gene Detail
Summary
  • Symbol
    5930430L01Rik
  • Name
    RIKEN cDNA 5930430L01 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:2443110
    NCBI Gene: 319982
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:148926866-148932025 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 89.14 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    270 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443110
 lncRNA gene Chr5:148926866-148932033 (-)
129S1/SvImJ MGP_129S1SvImJ_G0006869
 lincRNA gene Chr5:154781167-154786334 (-)
A/J MGP_AJ_G0006863
 lincRNA gene Chr5:148187187-148192367 (-)
AKR/J MGP_AKRJ_G0006833
 lincRNA gene Chr5:152748194-152753366 (-)
BALB/cJ MGP_BALBcJ_G0006839
 lincRNA gene Chr5:149433528-149438708 (-)
C3H/HeJ MGP_C3HHeJ_G0006784
 lincRNA gene Chr5:153739386-153744566 (-)
C57BL/6NJ MGP_C57BL6NJ_G0007004
 lincRNA gene Chr5:160477923-160483090 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0006255
 lincRNA gene Chr5:142554975-142560267 (-)
CAST/EiJ MGP_CASTEiJ_G0006703
 lincRNA gene Chr5:153337802-153343014 (-)
CBA/J MGP_CBAJ_G0006766
 lincRNA gene Chr5:167170952-167176119 (-)
DBA/2J MGP_DBA2J_G0006786
 lincRNA gene Chr5:147844625-147849792 (-)
FVB/NJ MGP_FVBNJ_G0006809
 lincRNA gene Chr5:147083208-147088433 (-)
LP/J MGP_LPJ_G0006869
 lincRNA gene Chr5:155461846-155467013 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0006791
 lincRNA gene Chr5:169348136-169353308 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0007006
 lincRNA gene Chr5:152687028-152692195 (-)
PWK/PhJ MGP_PWKPhJ_G0006644
 lincRNA gene Chr5:146996225-147001562 (-)
SPRET/EiJ MGP_SPRETEiJ_G0006552
 lincRNA gene Chr5:149979883-149985073 (-)
WSB/EiJ MGP_WSBEiJ_G0006757
 lincRNA gene Chr5:153499916-153505090 (-)



Homology
less
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    14
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 319982 NCBI Gene Model | MGI Sequence Detail 5160 C57BL/6J ±  kb
transcript NR_102383 RefSeq | MGI Sequence Detail 3985 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 14
    cDNA 14

    Microarray probesets 1
References
more
  • Summaries
    All 11
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory