B630019A10Rik Gene Detail

Summary

• Symbol
  B630019A10Rik
• Name
  RIKEN cDNA B630019A10 gene
• Synonyms
  C730014E05Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:2443371
  NCBI Gene: 105246089
• Alliance
  gene page
• Transcription Start Sites
  9 TSS

Location &
Maps

• Sequence Map
  Chr16:22994030-23023127 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  906 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443371	lncRNA gene	Chr16:22994030-23043196 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015316	unclassified non-coding RNA gene	Chr16:20743656-20797780 (+)
A/J	MGP_AJ_G0015291	unclassified non-coding RNA gene	Chr16:19747138-19797132 (+)
AKR/J	MGP_AKRJ_G0015254	unclassified non-coding RNA gene	Chr16:20594693-20643822 (+)
BALB/cJ	MGP_BALBcJ_G0015254	unclassified non-coding RNA gene	Chr16:19950905-19999123 (+)
C3H/HeJ	MGP_C3HHeJ_G0015078	unclassified non-coding RNA gene	Chr16:20706611-20760840 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015708	unclassified non-coding RNA gene	Chr16:21233520-21306999 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013450	unclassified non-coding RNA gene	Chr16:20379767-20434755 (+)
CAST/EiJ	MGP_CASTEiJ_G0014629	unclassified non-coding RNA gene	Chr16:20679801-20739576 (+)
CBA/J	MGP_CBAJ_G0015057	unclassified non-coding RNA gene	Chr16:22105926-22161684 (+)
DBA/2J	MGP_DBA2J_G0015152	unclassified non-coding RNA gene	Chr16:19705279-19754403 (+)
FVB/NJ	MGP_FVBNJ_G0015159	unclassified non-coding RNA gene	Chr16:19700057-19751887 (+)
LP/J	MGP_LPJ_G0015232	unclassified non-coding RNA gene	Chr16:20536888-20588875 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015185	unclassified non-coding RNA gene	Chr16:21639445-21695713 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015748	unclassified non-coding RNA gene	Chr16:20539724-20594493 (+)
PWK/PhJ	MGP_PWKPhJ_G0014420	unclassified non-coding RNA gene	Chr16:19977083-20027276 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014207	unclassified non-coding RNA gene	Chr16:20275095-20323326 (+)
WSB/EiJ	MGP_WSBEiJ_G0014736	unclassified non-coding RNA gene	Chr16:20491869-20544717 (+)

Homology

• Gene Tree
  B630019A10Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000068463 (Evidence)
• NCBI Gene
  105246089

Representative Sequences			Length	Strain/Species
genomic	105246089	NCBI Gene Model | MGI Sequence Detail	29098	C57BL/6J
transcript	NR_155420	RefSeq | MGI Sequence Detail	1110	ZRU/MplStud
polypeptide	Q8C8L4	UniProt | EBI | MGI Sequence Detail	104	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 5

  cDNA 5

Other
Accession IDs

MGI:2443121

References

• Summaries
  All 9
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for B630019A10Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr137662	Chr16:22993927-22993943 (+)	-95 bp
Tssr137663	Chr16:22993973-22993987 (+)	-50 bp
Tssr137664	Chr16:22994003-22994063 (+)	3 bp
Tssr137665	Chr16:22994100-22994127 (+)	84 bp
Tssr137666	Chr16:22994175-22994184 (+)	150 bp
Tssr137668	Chr16:23010818-23010825 (+)	16,792 bp
Tssr137669	Chr16:23010844-23010891 (+)	16,838 bp
Tssr137670	Chr16:23010894-23010921 (+)	16,878 bp
Tssr4824	Chr16:23010953-23010966 (+)	16,930 bp