F730043M19Rik Gene Detail

Summary

• Symbol
  F730043M19Rik
• Name
  RIKEN cDNA F730043M19 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2443237
  NCBI Gene: 320046
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr12:33161710-33197585 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 14.01 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  1017 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2443237	lncRNA gene	Chr12:33161710-33197611 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015228	unclassified non-coding RNA gene	Chr12:31169315-31212427 (-)
A/J	MGP_AJ_G0015202	unclassified non-coding RNA gene	Chr12:30237777-30274638 (-)
AKR/J	MGP_AKRJ_G0015165	unclassified non-coding RNA gene	Chr12:31228694-31264339 (-)
BALB/cJ	MGP_BALBcJ_G0015164	unclassified non-coding RNA gene	Chr12:30461455-30500348 (-)
C3H/HeJ	MGP_C3HHeJ_G0014988	unclassified non-coding RNA gene	Chr12:31076678-31114946 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0015621	unclassified non-coding RNA gene	Chr12:32095306-32132361 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013363	unclassified non-coding RNA gene	Chr12:29525509-29562911 (-)
CAST/EiJ	MGP_CASTEiJ_G0014541	unclassified non-coding RNA gene	Chr12:26120798-26157303 (-)
CBA/J	MGP_CBAJ_G0014967	unclassified non-coding RNA gene	Chr12:33135122-33172593 (-)
DBA/2J	MGP_DBA2J_G0015060	unclassified non-coding RNA gene	Chr12:30058316-30093980 (-)
FVB/NJ	MGP_FVBNJ_G0015071	unclassified non-coding RNA gene	Chr12:29846030-29881985 (-)
LP/J	MGP_LPJ_G0015141	unclassified non-coding RNA gene	Chr12:31246637-31284630 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015098	unclassified non-coding RNA gene	Chr12:32762344-32799320 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015660	unclassified non-coding RNA gene	Chr12:30728269-30764760 (-)
PWK/PhJ	MGP_PWKPhJ_G0014333	unclassified non-coding RNA gene	Chr12:24831439-24868317 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014120	unclassified non-coding RNA gene	Chr12:25352035-25390687 (-)
WSB/EiJ	MGP_WSBEiJ_G0014644	unclassified non-coding RNA gene	Chr12:30971083-31010613 (-)

Homology

• Gene Tree
  F730043M19Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  6 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  715
• Tissues
  8
• cDNA Data
  13
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  40
• RefSeq
  1
• UniProt
  2

• Ensembl
  ENSMUSG00000052125 (Evidence)
• NCBI Gene
  320046

Representative Sequences			Length	Strain/Species
genomic	320046	NCBI Gene Model | MGI Sequence Detail	35876	C57BL/6J
transcript	NR_015602	RefSeq | MGI Sequence Detail	1551	C57BL/6
polypeptide	Q3TRB1	UniProt | EBI | MGI Sequence Detail	149	Not Applicable

Protein
Information

• UniProt
  2 Sequences

Molecular
Reagents

• All nucleic 14

  cDNA 13

  Primer pair 1

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 3
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:263878 Aboudehen K, et al., Long noncoding RNA Hoxb3os is dysregulated in autosomal dominant polycystic kidney disease and regulates mTOR signaling. J Biol Chem. 2018 Jun 15;293(24):9388-9398

TSS for F730043M19Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr116104	Chr12:33197590-33197616 (-)	-18 bp
Tssr116103	Chr12:33197542-33197589 (-)	19 bp